Experiment: Carbon source Sucrose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3472 and Shewana3_3473 are separated by 465 nucleotides Shewana3_3473 and Shewana3_3474 are separated by 245 nucleotides
Shewana3_3472: Shewana3_3472 - TonB-dependent siderophore receptor (RefSeq), at 4,163,810 to 4,165,771
_3472
Shewana3_3473: Shewana3_3473 - hypothetical protein (RefSeq), at 4,166,237 to 4,166,905
_3473
Shewana3_3474: Shewana3_3474 - hypothetical protein (RefSeq), at 4,167,151 to 4,168,587
_3474
Position (kb)
4166
4167 Strain fitness (log2 ratio)
-2
-1
0
1 at 4165.277 kb on - strand, within Shewana3_3472 at 4165.334 kb on - strand, within Shewana3_3472 at 4165.344 kb on - strand, within Shewana3_3472 at 4165.396 kb on + strand, within Shewana3_3472 at 4165.500 kb on + strand, within Shewana3_3472 at 4165.627 kb on - strand at 4165.927 kb on + strand at 4166.015 kb on + strand at 4166.162 kb on + strand at 4166.170 kb on - strand at 4166.318 kb on - strand, within Shewana3_3473 at 4166.504 kb on + strand, within Shewana3_3473 at 4166.547 kb on + strand, within Shewana3_3473 at 4166.616 kb on - strand, within Shewana3_3473 at 4166.622 kb on + strand, within Shewana3_3473 at 4166.772 kb on - strand, within Shewana3_3473 at 4166.804 kb on + strand, within Shewana3_3473 at 4166.869 kb on + strand at 4166.869 kb on + strand at 4166.877 kb on - strand at 4166.887 kb on - strand at 4167.213 kb on + strand at 4167.335 kb on - strand, within Shewana3_3474 at 4167.780 kb on - strand, within Shewana3_3474
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM remove 4,165,277 - Shewana3_3472 0.75 -0.4 4,165,334 - Shewana3_3472 0.78 -1.8 4,165,344 - Shewana3_3472 0.78 -2.5 4,165,396 + Shewana3_3472 0.81 -0.9 4,165,500 + Shewana3_3472 0.86 -1.4 4,165,627 - -1.6 4,165,927 + -0.4 4,166,015 + -0.3 4,166,162 + +0.0 4,166,170 - -0.2 4,166,318 - Shewana3_3473 0.12 +0.1 4,166,504 + Shewana3_3473 0.40 -1.1 4,166,547 + Shewana3_3473 0.46 +0.0 4,166,616 - Shewana3_3473 0.57 -0.3 4,166,622 + Shewana3_3473 0.58 -1.2 4,166,772 - Shewana3_3473 0.80 +1.6 4,166,804 + Shewana3_3473 0.85 -1.4 4,166,869 + +0.8 4,166,869 + +0.6 4,166,877 - -0.9 4,166,887 - -0.8 4,167,213 + +0.1 4,167,335 - Shewana3_3474 0.13 +0.0 4,167,780 - Shewana3_3474 0.44 +1.1
Or see this region's nucleotide sequence