Experiment: Carbon source Sucrose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_3103 and Shewana3_3104 are separated by 145 nucleotides Shewana3_3104 and Shewana3_3105 are separated by 165 nucleotides
Shewana3_3103: Shewana3_3103 - rhodanese domain-containing protein (RefSeq), at 3,722,010 to 3,722,867
_3103
Shewana3_3104: Shewana3_3104 - rare lipoprotein A (RefSeq), at 3,723,013 to 3,723,408
_3104
Shewana3_3105: Shewana3_3105 - aldehyde dehydrogenase (acceptor) (RefSeq), at 3,723,574 to 3,725,070
_3105
Position (kb)
3723
3724 Strain fitness (log2 ratio)
-2
-1
0
1 at 3722.274 kb on - strand, within Shewana3_3103 at 3722.284 kb on - strand, within Shewana3_3103 at 3722.484 kb on + strand, within Shewana3_3103 at 3722.492 kb on - strand, within Shewana3_3103 at 3722.644 kb on + strand, within Shewana3_3103 at 3722.662 kb on - strand, within Shewana3_3103 at 3722.747 kb on + strand, within Shewana3_3103 at 3722.786 kb on - strand at 3722.830 kb on + strand at 3722.848 kb on - strand at 3722.949 kb on + strand at 3723.072 kb on + strand, within Shewana3_3104 at 3723.145 kb on - strand, within Shewana3_3104 at 3723.145 kb on - strand, within Shewana3_3104 at 3723.473 kb on + strand at 3723.491 kb on - strand at 3723.772 kb on - strand, within Shewana3_3105 at 3723.854 kb on + strand, within Shewana3_3105 at 3724.173 kb on - strand, within Shewana3_3105 at 3724.240 kb on - strand, within Shewana3_3105 at 3724.255 kb on + strand, within Shewana3_3105 at 3724.273 kb on - strand, within Shewana3_3105
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM remove 3,722,274 - Shewana3_3103 0.31 -0.5 3,722,284 - Shewana3_3103 0.32 +0.8 3,722,484 + Shewana3_3103 0.55 -1.4 3,722,492 - Shewana3_3103 0.56 -0.0 3,722,644 + Shewana3_3103 0.74 +0.7 3,722,662 - Shewana3_3103 0.76 -0.3 3,722,747 + Shewana3_3103 0.86 +0.3 3,722,786 - +0.7 3,722,830 + -0.9 3,722,848 - +0.5 3,722,949 + +0.1 3,723,072 + Shewana3_3104 0.15 +0.6 3,723,145 - Shewana3_3104 0.33 +0.3 3,723,145 - Shewana3_3104 0.33 -0.3 3,723,473 + -1.8 3,723,491 - +0.0 3,723,772 - Shewana3_3105 0.13 -0.4 3,723,854 + Shewana3_3105 0.19 -0.9 3,724,173 - Shewana3_3105 0.40 +0.7 3,724,240 - Shewana3_3105 0.44 -2.0 3,724,255 + Shewana3_3105 0.45 -0.5 3,724,273 - Shewana3_3105 0.47 -0.0
Or see this region's nucleotide sequence