Strain Fitness in Shewanella sp. ANA-3 around Shewana3_1299

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_1298 and Shewana3_1299 are separated by 0 nucleotidesShewana3_1299 and Shewana3_1300 are separated by 245 nucleotidesShewana3_1300 and Shewana3_1301 are separated by 105 nucleotides Shewana3_1298: Shewana3_1298 - hypothetical protein (RefSeq), at 1,511,704 to 1,512,651 _1298 Shewana3_1299: Shewana3_1299 - hypothetical protein (RefSeq), at 1,512,652 to 1,513,212 _1299 Shewana3_1300: Shewana3_1300 - hypothetical protein (RefSeq), at 1,513,458 to 1,513,937 _1300 Shewana3_1301: Shewana3_1301 - hypothetical protein (RefSeq), at 1,514,043 to 1,516,514 _1301 Position (kb) 1512 1513 1514Strain fitness (log2 ratio) -1 0 1at 1511.696 kb on + strandat 1511.808 kb on + strand, within Shewana3_1298at 1511.909 kb on + strand, within Shewana3_1298at 1512.037 kb on + strand, within Shewana3_1298at 1512.050 kb on - strand, within Shewana3_1298at 1512.192 kb on + strand, within Shewana3_1298at 1512.200 kb on - strand, within Shewana3_1298at 1512.200 kb on - strand, within Shewana3_1298at 1512.202 kb on - strand, within Shewana3_1298at 1512.844 kb on - strand, within Shewana3_1299at 1512.962 kb on + strand, within Shewana3_1299at 1513.029 kb on + strand, within Shewana3_1299at 1513.136 kb on + strand, within Shewana3_1299at 1513.338 kb on - strandat 1513.340 kb on + strandat 1513.660 kb on - strand, within Shewana3_1300at 1513.747 kb on + strand, within Shewana3_1300at 1513.859 kb on - strand, within Shewana3_1300at 1513.919 kb on + strandat 1513.919 kb on + strandat 1513.927 kb on - strandat 1513.976 kb on + strandat 1513.992 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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1,511,696 + +0.2
1,511,808 + Shewana3_1298 0.11 +0.7
1,511,909 + Shewana3_1298 0.22 -0.7
1,512,037 + Shewana3_1298 0.35 +0.0
1,512,050 - Shewana3_1298 0.36 -0.6
1,512,192 + Shewana3_1298 0.51 +0.1
1,512,200 - Shewana3_1298 0.52 +0.1
1,512,200 - Shewana3_1298 0.52 +1.0
1,512,202 - Shewana3_1298 0.53 +0.9
1,512,844 - Shewana3_1299 0.34 +0.2
1,512,962 + Shewana3_1299 0.55 -1.3
1,513,029 + Shewana3_1299 0.67 +0.4
1,513,136 + Shewana3_1299 0.86 -0.3
1,513,338 - +0.4
1,513,340 + +0.9
1,513,660 - Shewana3_1300 0.42 +0.2
1,513,747 + Shewana3_1300 0.60 -0.5
1,513,859 - Shewana3_1300 0.84 -0.7
1,513,919 + -0.8
1,513,919 + -0.4
1,513,927 - -0.7
1,513,976 + +0.2
1,513,992 - +0.0

Or see this region's nucleotide sequence