Strain Fitness in Shewanella sp. ANA-3 around Shewana3_0958

Experiment: Carbon source Sucrose 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShewana3_0956 and Shewana3_0957 are separated by 124 nucleotidesShewana3_0957 and Shewana3_0958 are separated by 129 nucleotidesShewana3_0958 and dnaK are separated by 285 nucleotides Shewana3_0956: Shewana3_0956 - hypothetical protein (RefSeq), at 1,121,973 to 1,122,275 _0956 Shewana3_0957: Shewana3_0957 - ybaK/ebsC protein (RefSeq), at 1,122,400 to 1,122,876 _0957 Shewana3_0958: Shewana3_0958 - hypothetical protein (RefSeq), at 1,123,006 to 1,123,926 _0958 Shewana3_0959: dnaK - molecular chaperone DnaK (RefSeq), at 1,124,212 to 1,126,131 dnaK Position (kb) 1123 1124Strain fitness (log2 ratio) -1 0 1at 1122.063 kb on - strand, within Shewana3_0956at 1122.063 kb on - strand, within Shewana3_0956at 1122.090 kb on + strand, within Shewana3_0956at 1122.113 kb on + strand, within Shewana3_0956at 1122.113 kb on + strand, within Shewana3_0956at 1122.113 kb on + strand, within Shewana3_0956at 1122.115 kb on + strand, within Shewana3_0956at 1122.121 kb on - strand, within Shewana3_0956at 1122.148 kb on + strand, within Shewana3_0956at 1122.187 kb on + strand, within Shewana3_0956at 1122.207 kb on + strand, within Shewana3_0956at 1122.348 kb on - strandat 1122.414 kb on - strandat 1122.474 kb on - strand, within Shewana3_0957at 1122.800 kb on - strand, within Shewana3_0957at 1123.093 kb on + strandat 1123.197 kb on - strand, within Shewana3_0958at 1123.248 kb on - strand, within Shewana3_0958at 1123.266 kb on + strand, within Shewana3_0958at 1123.293 kb on + strand, within Shewana3_0958at 1123.316 kb on - strand, within Shewana3_0958at 1123.324 kb on - strand, within Shewana3_0958at 1123.326 kb on + strand, within Shewana3_0958at 1123.433 kb on + strand, within Shewana3_0958at 1123.523 kb on - strand, within Shewana3_0958at 1123.652 kb on - strand, within Shewana3_0958at 1123.655 kb on + strand, within Shewana3_0958at 1123.663 kb on - strand, within Shewana3_0958at 1123.685 kb on + strand, within Shewana3_0958at 1123.765 kb on + strand, within Shewana3_0958at 1123.803 kb on - strand, within Shewana3_0958at 1123.884 kb on - strandat 1123.928 kb on + strandat 1123.975 kb on - strandat 1124.118 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM
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1,122,063 - Shewana3_0956 0.30 +1.4
1,122,063 - Shewana3_0956 0.30 +0.1
1,122,090 + Shewana3_0956 0.39 +1.5
1,122,113 + Shewana3_0956 0.46 -0.7
1,122,113 + Shewana3_0956 0.46 +0.0
1,122,113 + Shewana3_0956 0.46 +0.9
1,122,115 + Shewana3_0956 0.47 -0.5
1,122,121 - Shewana3_0956 0.49 +0.3
1,122,148 + Shewana3_0956 0.58 +0.5
1,122,187 + Shewana3_0956 0.71 -0.1
1,122,207 + Shewana3_0956 0.77 +0.5
1,122,348 - -0.1
1,122,414 - +0.2
1,122,474 - Shewana3_0957 0.16 +0.8
1,122,800 - Shewana3_0957 0.84 -0.1
1,123,093 + -0.6
1,123,197 - Shewana3_0958 0.21 +0.2
1,123,248 - Shewana3_0958 0.26 +1.0
1,123,266 + Shewana3_0958 0.28 +0.9
1,123,293 + Shewana3_0958 0.31 +0.1
1,123,316 - Shewana3_0958 0.34 +0.1
1,123,324 - Shewana3_0958 0.35 +0.3
1,123,326 + Shewana3_0958 0.35 +1.4
1,123,433 + Shewana3_0958 0.46 +0.4
1,123,523 - Shewana3_0958 0.56 +0.0
1,123,652 - Shewana3_0958 0.70 -0.1
1,123,655 + Shewana3_0958 0.70 +0.5
1,123,663 - Shewana3_0958 0.71 -0.4
1,123,685 + Shewana3_0958 0.74 -0.3
1,123,765 + Shewana3_0958 0.82 +0.2
1,123,803 - Shewana3_0958 0.87 +0.4
1,123,884 - -0.8
1,123,928 + -0.5
1,123,975 - +0.2
1,124,118 - -0.2

Or see this region's nucleotide sequence