Experiment: Carbon source Sucrose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0652 and Shewana3_0653 are separated by 1 nucleotides Shewana3_0653 and Shewana3_0654 are separated by 54 nucleotides
Shewana3_0652: Shewana3_0652 - aspartate kinase III (RefSeq), at 771,517 to 772,872
_0652
Shewana3_0653: Shewana3_0653 - succinylglutamate desuccinylase/aspartoacylase (RefSeq), at 772,874 to 773,989
_0653
Shewana3_0654: Shewana3_0654 - Mg2 transporter protein, CorA family protein (RefSeq), at 774,044 to 775,021
_0654
Position (kb) 772
773
774 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 771.876 kb on + strand, within Shewana3_0652 at 771.949 kb on + strand, within Shewana3_0652 at 772.180 kb on + strand, within Shewana3_0652 at 772.400 kb on - strand, within Shewana3_0652 at 772.436 kb on + strand, within Shewana3_0652 at 772.670 kb on + strand, within Shewana3_0652 at 772.732 kb on + strand, within Shewana3_0652 at 772.749 kb on - strand at 772.865 kb on - strand at 772.925 kb on + strand at 772.982 kb on - strand at 773.112 kb on + strand, within Shewana3_0653 at 773.262 kb on - strand, within Shewana3_0653 at 773.354 kb on + strand, within Shewana3_0653 at 773.355 kb on - strand, within Shewana3_0653 at 773.429 kb on + strand, within Shewana3_0653 at 773.526 kb on - strand, within Shewana3_0653 at 773.595 kb on + strand, within Shewana3_0653 at 773.733 kb on + strand, within Shewana3_0653 at 773.784 kb on - strand, within Shewana3_0653 at 773.859 kb on - strand, within Shewana3_0653 at 773.948 kb on - strand at 773.950 kb on + strand at 774.743 kb on - strand, within Shewana3_0654 at 774.758 kb on + strand, within Shewana3_0654 at 774.854 kb on + strand, within Shewana3_0654 at 774.948 kb on - strand at 774.948 kb on - strand at 774.955 kb on - strand at 774.979 kb on + strand at 774.982 kb on - strand at 774.987 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM remove 771,876 + Shewana3_0652 0.26 -2.4 771,949 + Shewana3_0652 0.32 -3.3 772,180 + Shewana3_0652 0.49 -2.0 772,400 - Shewana3_0652 0.65 -3.7 772,436 + Shewana3_0652 0.68 -2.4 772,670 + Shewana3_0652 0.85 -2.4 772,732 + Shewana3_0652 0.90 -3.4 772,749 - -4.4 772,865 - -0.4 772,925 + +0.6 772,982 - -0.0 773,112 + Shewana3_0653 0.21 +0.4 773,262 - Shewana3_0653 0.35 +0.2 773,354 + Shewana3_0653 0.43 -0.2 773,355 - Shewana3_0653 0.43 +0.8 773,429 + Shewana3_0653 0.50 +0.8 773,526 - Shewana3_0653 0.58 -0.9 773,595 + Shewana3_0653 0.65 +1.0 773,733 + Shewana3_0653 0.77 -0.3 773,784 - Shewana3_0653 0.82 +0.1 773,859 - Shewana3_0653 0.88 -0.6 773,948 - -0.9 773,950 + +0.6 774,743 - Shewana3_0654 0.71 +0.5 774,758 + Shewana3_0654 0.73 +0.1 774,854 + Shewana3_0654 0.83 -0.1 774,948 - +0.9 774,948 - +0.2 774,955 - +0.6 774,979 + -0.7 774,982 - +0.9 774,987 - -0.6
Or see this region's nucleotide sequence