Experiment: Carbon source Sucrose 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Shewana3_0175 and Shewana3_0176 overlap by 1 nucleotides Shewana3_0176 and Shewana3_0177 are separated by 96 nucleotides
Shewana3_0175: Shewana3_0175 - tRNA 2-selenouridine synthase (RefSeq), at 208,523 to 209,620
_0175
Shewana3_0176: Shewana3_0176 - selenophosphate synthase (RefSeq), at 209,620 to 210,678
_0176
Shewana3_0177: Shewana3_0177 - Delta-9 acyl-phospholipid desaturase (RefSeq), at 210,775 to 211,902
_0177
Position (kb) 209
210
211 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 208.639 kb on + strand, within Shewana3_0175 at 208.641 kb on - strand, within Shewana3_0175 at 208.657 kb on + strand, within Shewana3_0175 at 208.768 kb on + strand, within Shewana3_0175 at 208.768 kb on + strand, within Shewana3_0175 at 208.774 kb on - strand, within Shewana3_0175 at 208.776 kb on - strand, within Shewana3_0175 at 208.781 kb on + strand, within Shewana3_0175 at 208.809 kb on - strand, within Shewana3_0175 at 209.025 kb on - strand, within Shewana3_0175 at 209.056 kb on + strand, within Shewana3_0175 at 209.089 kb on - strand, within Shewana3_0175 at 209.132 kb on - strand, within Shewana3_0175 at 209.257 kb on - strand, within Shewana3_0175 at 209.330 kb on + strand, within Shewana3_0175 at 209.341 kb on - strand, within Shewana3_0175 at 209.672 kb on - strand at 209.838 kb on - strand, within Shewana3_0176 at 209.870 kb on - strand, within Shewana3_0176 at 209.926 kb on - strand, within Shewana3_0176 at 209.933 kb on - strand, within Shewana3_0176 at 209.965 kb on + strand, within Shewana3_0176 at 209.973 kb on - strand, within Shewana3_0176 at 209.999 kb on + strand, within Shewana3_0176 at 210.035 kb on + strand, within Shewana3_0176 at 210.239 kb on - strand, within Shewana3_0176 at 210.277 kb on + strand, within Shewana3_0176 at 210.277 kb on + strand, within Shewana3_0176 at 210.277 kb on + strand, within Shewana3_0176 at 210.340 kb on + strand, within Shewana3_0176 at 210.638 kb on + strand at 210.689 kb on - strand at 210.777 kb on + strand at 210.789 kb on + strand at 210.826 kb on - strand at 210.988 kb on - strand, within Shewana3_0177 at 211.072 kb on - strand, within Shewana3_0177 at 211.102 kb on - strand, within Shewana3_0177 at 211.108 kb on - strand, within Shewana3_0177 at 211.147 kb on - strand, within Shewana3_0177 at 211.196 kb on + strand, within Shewana3_0177 at 211.247 kb on + strand, within Shewana3_0177 at 211.247 kb on + strand, within Shewana3_0177 at 211.255 kb on - strand, within Shewana3_0177 at 211.270 kb on - strand, within Shewana3_0177 at 211.270 kb on - strand, within Shewana3_0177 at 211.386 kb on + strand, within Shewana3_0177 at 211.429 kb on - strand, within Shewana3_0177 at 211.467 kb on + strand, within Shewana3_0177 at 211.518 kb on + strand, within Shewana3_0177
Per-strain Table
Position Strand Gene LocusTag Fraction Carbon source Sucrose 10 mM remove 208,639 + Shewana3_0175 0.11 +0.1 208,641 - Shewana3_0175 0.11 -0.6 208,657 + Shewana3_0175 0.12 +0.9 208,768 + Shewana3_0175 0.22 +0.9 208,768 + Shewana3_0175 0.22 -0.9 208,774 - Shewana3_0175 0.23 -0.8 208,776 - Shewana3_0175 0.23 +0.0 208,781 + Shewana3_0175 0.23 +0.7 208,809 - Shewana3_0175 0.26 +0.4 209,025 - Shewana3_0175 0.46 +0.1 209,056 + Shewana3_0175 0.49 +0.3 209,089 - Shewana3_0175 0.52 -0.8 209,132 - Shewana3_0175 0.55 +0.7 209,257 - Shewana3_0175 0.67 +1.0 209,330 + Shewana3_0175 0.73 -0.3 209,341 - Shewana3_0175 0.74 -0.0 209,672 - +0.2 209,838 - Shewana3_0176 0.21 -2.8 209,870 - Shewana3_0176 0.24 +0.9 209,926 - Shewana3_0176 0.29 -0.6 209,933 - Shewana3_0176 0.30 -1.1 209,965 + Shewana3_0176 0.33 -0.2 209,973 - Shewana3_0176 0.33 -0.8 209,999 + Shewana3_0176 0.36 -0.9 210,035 + Shewana3_0176 0.39 +0.5 210,239 - Shewana3_0176 0.58 -0.3 210,277 + Shewana3_0176 0.62 +0.3 210,277 + Shewana3_0176 0.62 +0.9 210,277 + Shewana3_0176 0.62 -0.8 210,340 + Shewana3_0176 0.68 -0.4 210,638 + -0.4 210,689 - -0.8 210,777 + +0.5 210,789 + -0.3 210,826 - -0.7 210,988 - Shewana3_0177 0.19 -2.5 211,072 - Shewana3_0177 0.26 +1.5 211,102 - Shewana3_0177 0.29 +0.5 211,108 - Shewana3_0177 0.30 +0.6 211,147 - Shewana3_0177 0.33 -0.8 211,196 + Shewana3_0177 0.37 +0.3 211,247 + Shewana3_0177 0.42 +0.7 211,247 + Shewana3_0177 0.42 +0.4 211,255 - Shewana3_0177 0.43 -0.4 211,270 - Shewana3_0177 0.44 +0.2 211,270 - Shewana3_0177 0.44 +0.0 211,386 + Shewana3_0177 0.54 +0.4 211,429 - Shewana3_0177 0.58 -0.4 211,467 + Shewana3_0177 0.61 +1.4 211,518 + Shewana3_0177 0.66 -0.9
Or see this region's nucleotide sequence