Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS36395

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS36390 and RR42_RS36395 are separated by 47 nucleotidesRR42_RS36395 and RR42_RS36400 are separated by 6 nucleotidesRR42_RS36400 and RR42_RS36405 are separated by 27 nucleotides RR42_RS36390: RR42_RS36390 - acyl-CoA dehydrogenase, at 3,618,473 to 3,619,618 _RS36390 RR42_RS36395: RR42_RS36395 - acyl-CoA dehydrogenase, at 3,619,666 to 3,620,901 _RS36395 RR42_RS36400: RR42_RS36400 - hypothetical protein, at 3,620,908 to 3,621,306 _RS36400 RR42_RS36405: RR42_RS36405 - LuxR family transcriptional regulator, at 3,621,334 to 3,622,044 _RS36405 Position (kb) 3619 3620 3621Strain fitness (log2 ratio) -1 0 1at 3618.734 kb on + strand, within RR42_RS36390at 3618.734 kb on + strand, within RR42_RS36390at 3618.735 kb on - strand, within RR42_RS36390at 3618.735 kb on - strand, within RR42_RS36390at 3618.743 kb on - strand, within RR42_RS36390at 3618.866 kb on + strand, within RR42_RS36390at 3618.882 kb on + strand, within RR42_RS36390at 3619.102 kb on - strand, within RR42_RS36390at 3619.331 kb on + strand, within RR42_RS36390at 3619.331 kb on + strand, within RR42_RS36390at 3619.331 kb on + strand, within RR42_RS36390at 3619.331 kb on + strand, within RR42_RS36390at 3619.331 kb on + strand, within RR42_RS36390at 3619.332 kb on - strand, within RR42_RS36390at 3619.332 kb on - strand, within RR42_RS36390at 3619.601 kb on + strandat 3619.601 kb on + strandat 3619.780 kb on + strandat 3619.861 kb on + strand, within RR42_RS36395at 3619.861 kb on + strand, within RR42_RS36395at 3619.861 kb on + strand, within RR42_RS36395at 3619.862 kb on - strand, within RR42_RS36395at 3619.895 kb on - strand, within RR42_RS36395at 3620.134 kb on + strand, within RR42_RS36395at 3620.134 kb on + strand, within RR42_RS36395at 3620.134 kb on + strand, within RR42_RS36395at 3620.134 kb on + strand, within RR42_RS36395at 3620.134 kb on + strand, within RR42_RS36395at 3620.134 kb on + strand, within RR42_RS36395at 3620.135 kb on - strand, within RR42_RS36395at 3620.135 kb on - strand, within RR42_RS36395at 3620.401 kb on + strand, within RR42_RS36395at 3620.401 kb on + strand, within RR42_RS36395at 3620.402 kb on - strand, within RR42_RS36395at 3620.440 kb on + strand, within RR42_RS36395at 3620.716 kb on + strand, within RR42_RS36395at 3620.816 kb on - strandat 3620.899 kb on + strandat 3620.985 kb on - strand, within RR42_RS36400at 3621.498 kb on + strand, within RR42_RS36405at 3621.498 kb on + strand, within RR42_RS36405at 3621.499 kb on - strand, within RR42_RS36405at 3621.499 kb on - strand, within RR42_RS36405at 3621.531 kb on - strand, within RR42_RS36405at 3621.560 kb on + strand, within RR42_RS36405at 3621.560 kb on + strand, within RR42_RS36405at 3621.818 kb on + strand, within RR42_RS36405at 3621.829 kb on + strand, within RR42_RS36405

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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3,618,734 + RR42_RS36390 0.23 +1.7
3,618,734 + RR42_RS36390 0.23 +0.4
3,618,735 - RR42_RS36390 0.23 +0.4
3,618,735 - RR42_RS36390 0.23 -0.1
3,618,743 - RR42_RS36390 0.24 +0.4
3,618,866 + RR42_RS36390 0.34 -0.1
3,618,882 + RR42_RS36390 0.36 +0.3
3,619,102 - RR42_RS36390 0.55 +0.1
3,619,331 + RR42_RS36390 0.75 -0.4
3,619,331 + RR42_RS36390 0.75 +0.8
3,619,331 + RR42_RS36390 0.75 +0.3
3,619,331 + RR42_RS36390 0.75 -0.4
3,619,331 + RR42_RS36390 0.75 +0.7
3,619,332 - RR42_RS36390 0.75 +0.1
3,619,332 - RR42_RS36390 0.75 +1.7
3,619,601 + -0.4
3,619,601 + +0.9
3,619,780 + +0.1
3,619,861 + RR42_RS36395 0.16 +0.6
3,619,861 + RR42_RS36395 0.16 -0.2
3,619,861 + RR42_RS36395 0.16 +0.0
3,619,862 - RR42_RS36395 0.16 -0.4
3,619,895 - RR42_RS36395 0.19 +1.4
3,620,134 + RR42_RS36395 0.38 +1.3
3,620,134 + RR42_RS36395 0.38 -1.2
3,620,134 + RR42_RS36395 0.38 -0.6
3,620,134 + RR42_RS36395 0.38 -0.1
3,620,134 + RR42_RS36395 0.38 -0.0
3,620,134 + RR42_RS36395 0.38 -0.7
3,620,135 - RR42_RS36395 0.38 -0.0
3,620,135 - RR42_RS36395 0.38 +0.3
3,620,401 + RR42_RS36395 0.59 -0.4
3,620,401 + RR42_RS36395 0.59 +0.9
3,620,402 - RR42_RS36395 0.60 +0.2
3,620,440 + RR42_RS36395 0.63 +0.5
3,620,716 + RR42_RS36395 0.85 +0.7
3,620,816 - -0.1
3,620,899 + -0.1
3,620,985 - RR42_RS36400 0.19 -1.0
3,621,498 + RR42_RS36405 0.23 +1.1
3,621,498 + RR42_RS36405 0.23 +0.5
3,621,499 - RR42_RS36405 0.23 -0.2
3,621,499 - RR42_RS36405 0.23 +1.5
3,621,531 - RR42_RS36405 0.28 -1.2
3,621,560 + RR42_RS36405 0.32 -0.7
3,621,560 + RR42_RS36405 0.32 -1.1
3,621,818 + RR42_RS36405 0.68 -0.5
3,621,829 + RR42_RS36405 0.70 +0.4

Or see this region's nucleotide sequence