Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35820

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Dimethyl Sulfoxide 5 vol%
3,482,785	+		RR42_RS35815	0.13	-0.2
3,482,827	+		RR42_RS35815	0.17	-1.1
3,482,827	+		RR42_RS35815	0.17	-0.4
3,482,827	+		RR42_RS35815	0.17	-0.6
3,482,827	+		RR42_RS35815	0.17	-1.2
3,482,828	-		RR42_RS35815	0.18	+0.6
3,482,828	-		RR42_RS35815	0.18	-0.3
3,482,828	-		RR42_RS35815	0.18	-0.7
3,482,828	-		RR42_RS35815	0.18	-0.5
3,482,828	-		RR42_RS35815	0.18	+0.1
3,482,915	+		RR42_RS35815	0.28	-1.5
3,482,916	-		RR42_RS35815	0.28	-1.1
3,483,129	-		RR42_RS35815	0.52	-0.7
3,483,203	-		RR42_RS35815	0.61	-0.2
3,483,292	+		RR42_RS35815	0.71	-0.3
3,483,293	-		RR42_RS35815	0.71	-0.1
3,483,317	-		RR42_RS35815	0.74	-1.6
3,483,331	+		RR42_RS35815	0.76	-0.6
3,483,332	-		RR42_RS35815	0.76	-1.2
3,483,381	-		RR42_RS35815	0.82	-0.6
3,483,381	-		RR42_RS35815	0.82	+0.4
3,483,381	-		RR42_RS35815	0.82	-1.4
3,483,467	+				-1.1
3,483,487	+				-1.1
3,483,528	+				-0.5
3,483,529	-				+1.2
3,483,534	+				+1.1
3,483,535	-				-0.8
3,483,606	+				-1.3
3,483,714	+				+1.2
3,483,714	+				+0.2
3,483,715	-				-0.3
3,483,752	+				+1.0
3,483,752	+				-0.6
3,483,753	-				-0.8
3,483,753	-				-0.1
3,483,865	-		RR42_RS35820	0.14	+0.6
3,483,960	+		RR42_RS35820	0.30	-1.8
3,483,961	-		RR42_RS35820	0.30	-0.2
3,483,964	-		RR42_RS35820	0.30	+0.0
3,483,987	+		RR42_RS35820	0.34	-1.1
3,483,988	-		RR42_RS35820	0.34	-1.2
3,484,015	-		RR42_RS35820	0.39	-0.5
3,484,015	-		RR42_RS35820	0.39	-0.3
3,484,015	-		RR42_RS35820	0.39	+0.2
3,484,028	-		RR42_RS35820	0.41	+0.5
3,484,036	+		RR42_RS35820	0.42	+0.9
3,484,093	+		RR42_RS35820	0.52	-0.2
3,484,201	+		RR42_RS35820	0.69	-1.2
3,484,202	-		RR42_RS35820	0.70	-2.8
3,484,349	+				+0.5
3,484,441	+		RR42_RS35825	0.19	+0.8
3,484,442	-		RR42_RS35825	0.19	-0.3
3,484,442	-		RR42_RS35825	0.19	-1.9
3,484,442	-		RR42_RS35825	0.19	-0.5
3,484,442	-		RR42_RS35825	0.19	+0.1
3,484,442	-		RR42_RS35825	0.19	-0.7
3,484,508	+		RR42_RS35825	0.40	-0.7
3,484,508	+		RR42_RS35825	0.40	-0.5
3,484,508	+		RR42_RS35825	0.40	-0.7
3,484,650	+		RR42_RS35825	0.84	-0.7
3,484,651	-		RR42_RS35825	0.85	+0.1
3,484,815	+				-1.1
3,484,860	+				-1.8
3,484,869	+				-0.1
3,484,869	+				-0.3
3,484,888	+				-1.4
3,484,888	+				-1.0
3,484,888	+				-2.3
3,484,888	+				-0.5
3,484,889	-				-0.5
3,484,889	-				-1.2
3,484,889	-				-0.2
3,484,889	-				-2.4
3,484,889	-				+0.3
3,484,890	+				-0.2
3,484,956	+				-1.0
3,484,956	+				-1.4
3,484,956	+				-3.4
3,484,957	-				-0.4
3,484,977	-				+1.3
3,484,977	-				-0.3
3,485,023	+				+0.8
3,485,024	-				-1.6
3,485,024	-				-1.3
3,485,027	+				+0.3
3,485,027	+				-0.7
3,485,028	-				+1.3
3,485,028	-				-0.0
3,485,045	-				-1.4
3,485,045	-				-0.8
3,485,050	-				+0.5
3,485,058	-				+0.0
3,485,058	-				-1.4
3,485,079	+				-1.5
3,485,079	+				+0.3
3,485,079	+				-1.2
3,485,079	+				-0.5
3,485,079	+				-0.7
3,485,080	-				-1.1
3,485,080	-				-1.3
3,485,082	+				-0.4
3,485,083	-				-0.4
3,485,083	-				-0.3
3,485,096	+				-1.3
3,485,097	-				+0.1
3,485,117	-				+0.9
3,485,121	+				-0.7
3,485,121	+				-1.5
3,485,121	+				-0.7
3,485,121	+				-0.1
3,485,121	+				-0.7
3,485,121	+				-0.2
3,485,121	+				-0.0
3,485,122	-				+2.3
3,485,122	-				+0.1
3,485,122	-				-1.1
3,485,332	+		RR42_RS35830	0.30	-0.7
3,485,332	+		RR42_RS35830	0.30	-0.4
3,485,332	+		RR42_RS35830	0.30	-1.6
3,485,332	+		RR42_RS35830	0.30	+0.2
3,485,332	+		RR42_RS35830	0.30	-1.2
3,485,332	+		RR42_RS35830	0.30	-1.1
3,485,332	+		RR42_RS35830	0.30	-0.2
3,485,332	+		RR42_RS35830	0.30	+0.7
3,485,332	+		RR42_RS35830	0.30	-0.5
3,485,332	+		RR42_RS35830	0.30	-0.4
3,485,332	+		RR42_RS35830	0.30	-0.3
3,485,333	-		RR42_RS35830	0.30	+1.6
3,485,333	-		RR42_RS35830	0.30	-0.8
3,485,333	-		RR42_RS35830	0.30	-0.5
3,485,333	-		RR42_RS35830	0.30	-0.0
3,485,333	-		RR42_RS35830	0.30	-0.7
3,485,333	-		RR42_RS35830	0.30	-0.7
3,485,333	-		RR42_RS35830	0.30	+0.3
3,485,333	-		RR42_RS35830	0.30	+0.1
3,485,333	-		RR42_RS35830	0.30	-1.7
3,485,336	+		RR42_RS35830	0.30	-0.2
3,485,336	+		RR42_RS35830	0.30	+0.1
3,485,337	-		RR42_RS35830	0.30	+0.1
3,485,337	-		RR42_RS35830	0.30	+0.3
3,485,337	-		RR42_RS35830	0.30	-2.1
3,485,337	-		RR42_RS35830	0.30	-0.3
3,485,344	+		RR42_RS35830	0.31	-0.0
3,485,344	+		RR42_RS35830	0.31	+0.2
3,485,345	-		RR42_RS35830	0.31	+0.4