Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS35120

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS35105 and RR42_RS35110 are separated by 88 nucleotidesRR42_RS35110 and RR42_RS35115 are separated by 152 nucleotidesRR42_RS35115 and RR42_RS35120 are separated by 52 nucleotidesRR42_RS35120 and RR42_RS35125 are separated by 118 nucleotides RR42_RS35105: RR42_RS35105 - hydrolase, at 3,328,330 to 3,329,418 _RS35105 RR42_RS35110: RR42_RS35110 - hypothetical protein, at 3,329,507 to 3,329,689 _RS35110 RR42_RS35115: RR42_RS35115 - riboflavin synthase subunit beta, at 3,329,842 to 3,330,312 _RS35115 RR42_RS35120: RR42_RS35120 - benzoyl-CoA oxygenase, at 3,330,365 to 3,331,645 _RS35120 RR42_RS35125: RR42_RS35125 - benzoyl-CoA oxygenase, at 3,331,764 to 3,333,191 _RS35125 Position (kb) 3330 3331 3332Strain fitness (log2 ratio) -1 0 1 2at 3329.421 kb on + strandat 3329.515 kb on + strandat 3329.515 kb on + strandat 3329.515 kb on + strandat 3329.515 kb on + strandat 3329.516 kb on - strandat 3329.516 kb on - strandat 3329.516 kb on - strandat 3329.606 kb on + strand, within RR42_RS35110at 3329.606 kb on + strandat 3329.607 kb on - strand, within RR42_RS35110at 3329.689 kb on + strandat 3329.690 kb on - strandat 3330.094 kb on + strand, within RR42_RS35115at 3330.094 kb on + strand, within RR42_RS35115at 3330.095 kb on - strand, within RR42_RS35115at 3330.370 kb on - strandat 3330.501 kb on + strand, within RR42_RS35120at 3330.502 kb on - strand, within RR42_RS35120at 3330.512 kb on - strand, within RR42_RS35120at 3330.657 kb on + strand, within RR42_RS35120at 3330.657 kb on + strand, within RR42_RS35120at 3330.657 kb on + strand, within RR42_RS35120at 3330.658 kb on - strand, within RR42_RS35120at 3330.886 kb on + strand, within RR42_RS35120at 3330.886 kb on + strand, within RR42_RS35120at 3330.887 kb on - strand, within RR42_RS35120at 3330.887 kb on - strand, within RR42_RS35120at 3330.887 kb on - strand, within RR42_RS35120at 3330.888 kb on + strand, within RR42_RS35120at 3330.889 kb on - strand, within RR42_RS35120at 3330.958 kb on + strand, within RR42_RS35120at 3330.958 kb on + strand, within RR42_RS35120at 3330.958 kb on + strand, within RR42_RS35120at 3330.958 kb on + strand, within RR42_RS35120at 3331.115 kb on - strand, within RR42_RS35120at 3331.115 kb on - strand, within RR42_RS35120at 3331.206 kb on + strand, within RR42_RS35120at 3331.206 kb on + strand, within RR42_RS35120at 3331.206 kb on + strand, within RR42_RS35120at 3331.216 kb on + strand, within RR42_RS35120at 3331.216 kb on + strand, within RR42_RS35120at 3331.216 kb on + strand, within RR42_RS35120at 3331.217 kb on - strand, within RR42_RS35120at 3331.217 kb on - strand, within RR42_RS35120at 3331.217 kb on - strand, within RR42_RS35120at 3331.218 kb on + strand, within RR42_RS35120at 3331.218 kb on + strand, within RR42_RS35120at 3331.219 kb on - strand, within RR42_RS35120at 3331.524 kb on + strandat 3331.524 kb on + strandat 3331.524 kb on + strandat 3331.524 kb on + strandat 3331.524 kb on + strandat 3331.524 kb on + strandat 3331.780 kb on + strandat 3331.883 kb on - strandat 3332.095 kb on + strand, within RR42_RS35125at 3332.182 kb on + strand, within RR42_RS35125at 3332.182 kb on + strand, within RR42_RS35125at 3332.183 kb on - strand, within RR42_RS35125at 3332.312 kb on - strand, within RR42_RS35125at 3332.563 kb on + strand, within RR42_RS35125at 3332.563 kb on + strand, within RR42_RS35125at 3332.564 kb on - strand, within RR42_RS35125

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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3,329,421 + -0.1
3,329,515 + +0.5
3,329,515 + -0.1
3,329,515 + -0.4
3,329,515 + +0.6
3,329,516 - -0.7
3,329,516 - +0.0
3,329,516 - +0.1
3,329,606 + RR42_RS35110 0.54 +0.3
3,329,606 + +0.1
3,329,607 - RR42_RS35110 0.55 +2.2
3,329,689 + -1.1
3,329,690 - -0.5
3,330,094 + RR42_RS35115 0.54 -0.5
3,330,094 + RR42_RS35115 0.54 -0.5
3,330,095 - RR42_RS35115 0.54 -0.2
3,330,370 - +1.1
3,330,501 + RR42_RS35120 0.11 -1.0
3,330,502 - RR42_RS35120 0.11 +0.1
3,330,512 - RR42_RS35120 0.11 +0.5
3,330,657 + RR42_RS35120 0.23 +0.0
3,330,657 + RR42_RS35120 0.23 -0.3
3,330,657 + RR42_RS35120 0.23 -1.5
3,330,658 - RR42_RS35120 0.23 +2.1
3,330,886 + RR42_RS35120 0.41 -0.2
3,330,886 + RR42_RS35120 0.41 -0.6
3,330,887 - RR42_RS35120 0.41 -0.3
3,330,887 - RR42_RS35120 0.41 -0.6
3,330,887 - RR42_RS35120 0.41 -0.3
3,330,888 + RR42_RS35120 0.41 +0.9
3,330,889 - RR42_RS35120 0.41 +0.5
3,330,958 + RR42_RS35120 0.46 -0.6
3,330,958 + RR42_RS35120 0.46 +0.0
3,330,958 + RR42_RS35120 0.46 -0.1
3,330,958 + RR42_RS35120 0.46 +0.1
3,331,115 - RR42_RS35120 0.59 +0.1
3,331,115 - RR42_RS35120 0.59 -0.6
3,331,206 + RR42_RS35120 0.66 -0.5
3,331,206 + RR42_RS35120 0.66 -1.1
3,331,206 + RR42_RS35120 0.66 -0.6
3,331,216 + RR42_RS35120 0.66 +0.1
3,331,216 + RR42_RS35120 0.66 +0.5
3,331,216 + RR42_RS35120 0.66 +0.1
3,331,217 - RR42_RS35120 0.67 -0.3
3,331,217 - RR42_RS35120 0.67 +0.1
3,331,217 - RR42_RS35120 0.67 -0.3
3,331,218 + RR42_RS35120 0.67 +0.3
3,331,218 + RR42_RS35120 0.67 -0.3
3,331,219 - RR42_RS35120 0.67 +0.5
3,331,524 + +0.4
3,331,524 + -0.6
3,331,524 + +1.4
3,331,524 + +1.0
3,331,524 + -1.4
3,331,524 + +0.4
3,331,780 + +0.1
3,331,883 - +0.3
3,332,095 + RR42_RS35125 0.23 +0.3
3,332,182 + RR42_RS35125 0.29 -0.2
3,332,182 + RR42_RS35125 0.29 -0.9
3,332,183 - RR42_RS35125 0.29 -0.6
3,332,312 - RR42_RS35125 0.38 +0.2
3,332,563 + RR42_RS35125 0.56 -0.3
3,332,563 + RR42_RS35125 0.56 +0.4
3,332,564 - RR42_RS35125 0.56 +0.5

Or see this region's nucleotide sequence