Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33785

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS33780 and RR42_RS33785 are separated by 288 nucleotidesRR42_RS33785 and RR42_RS33790 are separated by 37 nucleotides RR42_RS33780: RR42_RS33780 - GABA permease, at 3,008,155 to 3,009,579 _RS33780 RR42_RS33785: RR42_RS33785 - transcriptional regulator, at 3,009,868 to 3,010,278 _RS33785 RR42_RS33790: RR42_RS33790 - FAD-dependent oxidoreductase, at 3,010,316 to 3,011,755 _RS33790 Position (kb) 3009 3010 3011Strain fitness (log2 ratio) -2 -1 0 1at 3008.923 kb on + strand, within RR42_RS33780at 3008.923 kb on + strand, within RR42_RS33780at 3008.923 kb on + strand, within RR42_RS33780at 3008.923 kb on + strand, within RR42_RS33780at 3008.923 kb on + strand, within RR42_RS33780at 3008.924 kb on - strand, within RR42_RS33780at 3008.924 kb on - strand, within RR42_RS33780at 3008.924 kb on - strand, within RR42_RS33780at 3008.924 kb on - strand, within RR42_RS33780at 3008.990 kb on - strand, within RR42_RS33780at 3008.990 kb on - strand, within RR42_RS33780at 3008.990 kb on - strand, within RR42_RS33780at 3008.990 kb on - strand, within RR42_RS33780at 3009.088 kb on + strand, within RR42_RS33780at 3009.230 kb on - strand, within RR42_RS33780at 3009.230 kb on - strand, within RR42_RS33780at 3009.234 kb on - strand, within RR42_RS33780at 3009.271 kb on + strand, within RR42_RS33780at 3009.271 kb on + strand, within RR42_RS33780at 3009.272 kb on - strand, within RR42_RS33780at 3009.295 kb on + strand, within RR42_RS33780at 3009.295 kb on + strand, within RR42_RS33780at 3009.296 kb on - strand, within RR42_RS33780at 3009.445 kb on - strandat 3009.508 kb on + strandat 3009.509 kb on - strandat 3009.763 kb on - strandat 3009.785 kb on + strandat 3009.785 kb on + strandat 3009.785 kb on + strandat 3009.786 kb on - strandat 3009.799 kb on - strandat 3010.433 kb on + strandat 3010.434 kb on - strandat 3010.445 kb on + strandat 3010.805 kb on + strand, within RR42_RS33790at 3010.806 kb on - strand, within RR42_RS33790at 3010.806 kb on - strand, within RR42_RS33790at 3010.919 kb on + strand, within RR42_RS33790at 3011.084 kb on + strand, within RR42_RS33790at 3011.084 kb on + strand, within RR42_RS33790at 3011.085 kb on - strand, within RR42_RS33790at 3011.146 kb on + strand, within RR42_RS33790at 3011.146 kb on + strand, within RR42_RS33790at 3011.147 kb on - strand, within RR42_RS33790

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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3,008,923 + RR42_RS33780 0.54 -1.8
3,008,923 + RR42_RS33780 0.54 -0.4
3,008,923 + RR42_RS33780 0.54 -0.4
3,008,923 + RR42_RS33780 0.54 -2.0
3,008,923 + RR42_RS33780 0.54 -1.1
3,008,924 - RR42_RS33780 0.54 -0.2
3,008,924 - RR42_RS33780 0.54 +0.0
3,008,924 - RR42_RS33780 0.54 +0.5
3,008,924 - RR42_RS33780 0.54 +0.2
3,008,990 - RR42_RS33780 0.59 +1.1
3,008,990 - RR42_RS33780 0.59 +0.1
3,008,990 - RR42_RS33780 0.59 -1.1
3,008,990 - RR42_RS33780 0.59 +0.3
3,009,088 + RR42_RS33780 0.65 -0.8
3,009,230 - RR42_RS33780 0.75 -0.3
3,009,230 - RR42_RS33780 0.75 +0.2
3,009,234 - RR42_RS33780 0.76 -0.1
3,009,271 + RR42_RS33780 0.78 -0.1
3,009,271 + RR42_RS33780 0.78 -0.0
3,009,272 - RR42_RS33780 0.78 -0.9
3,009,295 + RR42_RS33780 0.80 -0.7
3,009,295 + RR42_RS33780 0.80 -0.4
3,009,296 - RR42_RS33780 0.80 +0.3
3,009,445 - -0.8
3,009,508 + -0.8
3,009,509 - -0.3
3,009,763 - +0.3
3,009,785 + -0.2
3,009,785 + -1.1
3,009,785 + -0.5
3,009,786 - -0.2
3,009,799 - +0.3
3,010,433 + +0.5
3,010,434 - -1.3
3,010,445 + -0.6
3,010,805 + RR42_RS33790 0.34 -1.0
3,010,806 - RR42_RS33790 0.34 -0.8
3,010,806 - RR42_RS33790 0.34 -0.5
3,010,919 + RR42_RS33790 0.42 -0.2
3,011,084 + RR42_RS33790 0.53 -0.2
3,011,084 + RR42_RS33790 0.53 -0.2
3,011,085 - RR42_RS33790 0.53 -0.5
3,011,146 + RR42_RS33790 0.58 +0.4
3,011,146 + RR42_RS33790 0.58 -2.2
3,011,147 - RR42_RS33790 0.58 -0.8

Or see this region's nucleotide sequence