Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS33200

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Dimethyl Sulfoxide 5 vol%
2,854,992	+		RR42_RS33195	0.34	+0.8
2,854,992	+		RR42_RS33195	0.34	+0.1
2,854,992	+		RR42_RS33195	0.34	+1.7
2,855,043	+		RR42_RS33195	0.37	+0.3
2,855,043	+		RR42_RS33195	0.37	-0.6
2,855,044	-		RR42_RS33195	0.37	+1.5
2,855,044	-		RR42_RS33195	0.37	+1.0
2,855,044	-		RR42_RS33195	0.37	+0.3
2,855,044	-		RR42_RS33195	0.37	-0.1
2,855,080	+		RR42_RS33195	0.40	+0.3
2,855,080	+		RR42_RS33195	0.40	+0.8
2,855,190	+		RR42_RS33195	0.48	+0.9
2,855,371	+		RR42_RS33195	0.61	-0.1
2,855,651	-		RR42_RS33195	0.81	+0.6
2,855,684	+		RR42_RS33195	0.84	+0.9
2,855,684	+		RR42_RS33195	0.84	+1.1
2,855,684	+		RR42_RS33195	0.84	+0.2
2,855,684	+		RR42_RS33195	0.84	+0.9
2,855,684	+		RR42_RS33195	0.84	+0.7
2,855,684	+		RR42_RS33195	0.84	+0.6
2,855,685	-		RR42_RS33195	0.84	+0.1
2,855,685	-		RR42_RS33195	0.84	-0.7
2,855,685	-		RR42_RS33195	0.84	+1.4
2,855,689	-		RR42_RS33195	0.84	-0.1
2,855,689	-		RR42_RS33195	0.84	+2.2
2,855,709	+		RR42_RS33195	0.85	-0.5
2,855,710	-		RR42_RS33195	0.85	-1.1
2,855,826	+				+0.9
2,855,827	-				+1.4
2,855,864	+				+0.6
2,855,865	-				+0.5
2,855,966	+				-0.6
2,855,966	+				-0.0
2,855,966	+				+1.0
2,855,967	-				+1.1
2,855,992	+		RR42_RS33200	0.13	+0.2
2,855,992	+		RR42_RS33200	0.13	+0.6
2,855,992	+		RR42_RS33200	0.13	-0.2
2,855,992	+		RR42_RS33200	0.13	+0.6
2,855,992	+		RR42_RS33200	0.13	+0.7
2,855,992	+		RR42_RS33200	0.13	+1.5
2,855,996	+		RR42_RS33200	0.14	+0.4
2,855,997	-		RR42_RS33200	0.14	+0.0
2,855,997	-		RR42_RS33200	0.14	-0.8
2,856,052	+		RR42_RS33200	0.29	+0.2
2,856,052	+		RR42_RS33200	0.29	-0.3
2,856,060	+		RR42_RS33200	0.31	+0.3
2,856,060	+		RR42_RS33200	0.31	+0.6
2,856,082	+		RR42_RS33200	0.37	+0.8
2,856,082	+		RR42_RS33200	0.37	+0.1
2,856,082	+		RR42_RS33200	0.37	+1.1
2,856,083	-		RR42_RS33200	0.37	-0.6
2,856,110	+		RR42_RS33200	0.44	+0.4
2,856,110	+		RR42_RS33200	0.44	+0.1
2,856,110	+		RR42_RS33200	0.44	+0.7
2,856,111	-		RR42_RS33200	0.45	-0.2
2,856,257	+		RR42_RS33200	0.83	-0.3
2,856,285	-				-0.3
2,856,285	-				+0.5
2,856,316	+				-0.4
2,856,316	+				-0.4
2,856,317	-				-0.1
2,856,317	-				+1.2
2,856,338	+				-0.4
2,856,338	+				+0.1
2,856,338	+				+0.1
2,856,370	+				+0.2
2,856,371	-				+0.7
2,856,419	+				+0.9
2,856,419	+				+0.1
2,856,419	+				+0.4
2,856,420	-				+0.9
2,856,420	-				+0.4
2,856,482	-				-0.1
2,856,482	-				-0.9
2,856,635	-		RR42_RS33205	0.20	-0.8
2,856,641	+		RR42_RS33205	0.21	+0.8
2,856,667	+		RR42_RS33205	0.23	+0.5
2,856,667	+		RR42_RS33205	0.23	-0.7
2,856,667	+		RR42_RS33205	0.23	-0.2
2,856,920	-		RR42_RS33205	0.40	+1.7
2,856,920	-		RR42_RS33205	0.40	-1.6
2,856,920	-		RR42_RS33205	0.40	-0.1
2,856,988	+		RR42_RS33205	0.45	+0.1
2,856,989	-		RR42_RS33205	0.45	+0.1
2,856,989	-		RR42_RS33205	0.45	+2.1
2,857,055	+		RR42_RS33205	0.50	-0.3
2,857,055	+		RR42_RS33205	0.50	-0.4
2,857,055	+		RR42_RS33205	0.50	-0.3
2,857,055	+		RR42_RS33205	0.50	-0.2
2,857,056	-		RR42_RS33205	0.50	+0.3
2,857,076	+		RR42_RS33205	0.51	+0.3
2,857,077	-		RR42_RS33205	0.51	+0.8
2,857,089	+		RR42_RS33205	0.52	+1.0
2,857,114	+		RR42_RS33205	0.54	-0.7
2,857,126	+		RR42_RS33205	0.55	+0.3
2,857,141	+		RR42_RS33205	0.56	-0.0
2,857,141	+		RR42_RS33205	0.56	+0.4
2,857,142	-		RR42_RS33205	0.56	+0.6
2,857,169	+		RR42_RS33205	0.58	+0.5
2,857,169	+		RR42_RS33205	0.58	+1.3
2,857,169	+		RR42_RS33205	0.58	+1.6
2,857,169	+		RR42_RS33205	0.58	-0.6
2,857,170	-		RR42_RS33205	0.58	+0.7
2,857,170	-		RR42_RS33205	0.58	+1.1
2,857,285	+		RR42_RS33205	0.66	+0.5
2,857,285	+		RR42_RS33205	0.66	+0.3