Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS27695
Experiment: R2A with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Dimethyl Sulfoxide 5 vol% |
---|---|---|---|---|---|
remove | |||||
1,577,777 | + | RR42_RS27690 | 0.64 | -0.8 | |
1,578,028 | - | RR42_RS27690 | 0.81 | +0.8 | |
1,578,110 | + | RR42_RS27690 | 0.86 | +0.5 | |
1,578,131 | + | RR42_RS27690 | 0.88 | -0.0 | |
1,578,132 | - | RR42_RS27690 | 0.88 | -1.2 | |
1,578,157 | + | RR42_RS27690 | 0.89 | -0.8 | |
1,578,158 | - | RR42_RS27690 | 0.89 | -1.3 | |
1,578,158 | - | RR42_RS27690 | 0.89 | +0.4 | |
1,578,412 | + | +0.6 | |||
1,578,413 | - | +0.2 | |||
1,578,417 | + | -0.8 | |||
1,578,417 | + | +1.0 | |||
1,578,417 | + | +0.9 | |||
1,578,417 | + | -1.7 | |||
1,578,417 | + | +0.2 | |||
1,578,418 | - | -0.1 | |||
1,578,418 | - | +0.5 | |||
1,578,418 | - | -0.5 | |||
1,578,641 | + | RR42_RS27695 | 0.15 | -1.9 | |
1,578,691 | - | RR42_RS27695 | 0.24 | -0.2 | |
1,578,912 | + | RR42_RS27695 | 0.65 | +0.2 | |
1,578,913 | - | RR42_RS27695 | 0.65 | -0.3 | |
1,579,178 | - | +1.9 | |||
1,579,178 | - | +1.6 | |||
1,579,293 | + | -0.4 | |||
1,579,296 | - | -1.8 | |||
1,579,370 | + | RR42_RS27700 | 0.12 | +0.7 | |
1,579,371 | - | RR42_RS27700 | 0.12 | -0.0 | |
1,579,607 | + | -0.7 | |||
1,579,618 | + | +0.8 | |||
1,579,618 | + | +0.3 | |||
1,579,640 | + | -0.0 | |||
1,579,641 | - | +0.1 | |||
1,579,775 | - | RR42_RS27705 | 0.13 | -0.8 | |
1,579,892 | + | RR42_RS27705 | 0.27 | -0.2 | |
1,579,952 | - | RR42_RS27705 | 0.34 | -0.2 |
Or see this region's nucleotide sequence