Experiment: R2A with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS27670 and RR42_RS27675 are separated by 295 nucleotides RR42_RS27675 and RR42_RS27680 are separated by 143 nucleotides
RR42_RS27670: RR42_RS27670 - LysR family transcriptional regulator, at 1,569,755 to 1,570,711
_RS27670
RR42_RS27675: RR42_RS27675 - esterase, at 1,571,007 to 1,571,930
_RS27675
RR42_RS27680: RR42_RS27680 - MexE family multidrug efflux RND transporter periplasmic adaptor subunit, at 1,572,074 to 1,573,345
_RS27680
Position (kb) 1571
1572 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1570.030 kb on - strand, within RR42_RS27670 at 1570.110 kb on - strand, within RR42_RS27670 at 1570.110 kb on - strand, within RR42_RS27670 at 1570.137 kb on + strand, within RR42_RS27670 at 1570.137 kb on + strand, within RR42_RS27670 at 1570.137 kb on + strand, within RR42_RS27670 at 1570.200 kb on + strand, within RR42_RS27670 at 1570.216 kb on - strand, within RR42_RS27670 at 1570.515 kb on + strand, within RR42_RS27670 at 1570.515 kb on + strand, within RR42_RS27670 at 1570.516 kb on - strand, within RR42_RS27670 at 1570.518 kb on + strand, within RR42_RS27670 at 1570.519 kb on - strand, within RR42_RS27670 at 1570.886 kb on - strand at 1570.926 kb on - strand at 1570.948 kb on + strand at 1570.948 kb on + strand at 1570.948 kb on + strand at 1570.948 kb on + strand at 1570.949 kb on - strand at 1570.967 kb on - strand at 1571.044 kb on + strand at 1571.045 kb on - strand at 1571.125 kb on - strand, within RR42_RS27675 at 1571.178 kb on + strand, within RR42_RS27675 at 1571.178 kb on + strand, within RR42_RS27675 at 1571.178 kb on + strand, within RR42_RS27675 at 1571.586 kb on + strand, within RR42_RS27675 at 1571.587 kb on - strand, within RR42_RS27675 at 1571.590 kb on - strand, within RR42_RS27675 at 1571.598 kb on + strand, within RR42_RS27675 at 1571.632 kb on - strand, within RR42_RS27675 at 1571.940 kb on - strand at 1572.395 kb on + strand, within RR42_RS27680 at 1572.611 kb on + strand, within RR42_RS27680 at 1572.612 kb on - strand, within RR42_RS27680 at 1572.612 kb on - strand, within RR42_RS27680 at 1572.612 kb on - strand, within RR42_RS27680 at 1572.613 kb on + strand, within RR42_RS27680 at 1572.718 kb on - strand, within RR42_RS27680 at 1572.734 kb on + strand, within RR42_RS27680 at 1572.735 kb on - strand, within RR42_RS27680 at 1572.773 kb on + strand, within RR42_RS27680 at 1572.863 kb on + strand, within RR42_RS27680
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol% remove 1,570,030 - RR42_RS27670 0.29 +0.9 1,570,110 - RR42_RS27670 0.37 -1.6 1,570,110 - RR42_RS27670 0.37 +0.6 1,570,137 + RR42_RS27670 0.40 -0.2 1,570,137 + RR42_RS27670 0.40 -0.1 1,570,137 + RR42_RS27670 0.40 +0.5 1,570,200 + RR42_RS27670 0.46 +0.3 1,570,216 - RR42_RS27670 0.48 +0.9 1,570,515 + RR42_RS27670 0.79 +1.3 1,570,515 + RR42_RS27670 0.79 -0.2 1,570,516 - RR42_RS27670 0.80 +0.2 1,570,518 + RR42_RS27670 0.80 +1.1 1,570,519 - RR42_RS27670 0.80 +0.3 1,570,886 - +0.4 1,570,926 - +0.3 1,570,948 + -1.9 1,570,948 + +0.2 1,570,948 + -0.3 1,570,948 + +0.4 1,570,949 - +0.2 1,570,967 - -1.0 1,571,044 + +0.4 1,571,045 - -0.4 1,571,125 - RR42_RS27675 0.13 +0.3 1,571,178 + RR42_RS27675 0.19 -0.4 1,571,178 + RR42_RS27675 0.19 -1.0 1,571,178 + RR42_RS27675 0.19 +1.2 1,571,586 + RR42_RS27675 0.63 -4.3 1,571,587 - RR42_RS27675 0.63 -0.9 1,571,590 - RR42_RS27675 0.63 +0.2 1,571,598 + RR42_RS27675 0.64 -0.7 1,571,632 - RR42_RS27675 0.68 +0.4 1,571,940 - +0.8 1,572,395 + RR42_RS27680 0.25 +0.0 1,572,611 + RR42_RS27680 0.42 -0.0 1,572,612 - RR42_RS27680 0.42 +0.4 1,572,612 - RR42_RS27680 0.42 -1.6 1,572,612 - RR42_RS27680 0.42 +0.6 1,572,613 + RR42_RS27680 0.42 -0.2 1,572,718 - RR42_RS27680 0.51 +0.5 1,572,734 + RR42_RS27680 0.52 -0.3 1,572,735 - RR42_RS27680 0.52 +0.0 1,572,773 + RR42_RS27680 0.55 +0.2 1,572,863 + RR42_RS27680 0.62 -0.3
Or see this region's nucleotide sequence