Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24640

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS24630 and RR42_RS24635 are separated by 44 nucleotidesRR42_RS24635 and RR42_RS24640 are separated by 34 nucleotidesRR42_RS24640 and RR42_RS24645 overlap by 1 nucleotidesRR42_RS24645 and RR42_RS24650 are separated by 245 nucleotides RR42_RS24630: RR42_RS24630 - amine oxidase, at 862,468 to 863,964 _RS24630 RR42_RS24635: RR42_RS24635 - hypothetical protein, at 864,009 to 864,650 _RS24635 RR42_RS24640: RR42_RS24640 - amine oxidase, at 864,685 to 866,181 _RS24640 RR42_RS24645: RR42_RS24645 - hypothetical protein, at 866,181 to 866,861 _RS24645 RR42_RS24650: RR42_RS24650 - membrane protein, at 867,107 to 867,796 _RS24650 Position (kb) 864 865 866 867Strain fitness (log2 ratio) -3 -2 -1 0 1at 863.689 kb on + strand, within RR42_RS24630at 863.731 kb on + strand, within RR42_RS24630at 863.732 kb on - strand, within RR42_RS24630at 863.732 kb on - strand, within RR42_RS24630at 863.887 kb on + strandat 863.888 kb on - strandat 863.970 kb on - strandat 864.037 kb on + strandat 864.038 kb on - strandat 864.066 kb on + strandat 864.082 kb on - strand, within RR42_RS24635at 864.189 kb on + strand, within RR42_RS24635at 864.216 kb on + strand, within RR42_RS24635at 864.217 kb on - strand, within RR42_RS24635at 864.489 kb on + strand, within RR42_RS24635at 864.520 kb on - strand, within RR42_RS24635at 864.615 kb on - strandat 864.634 kb on - strandat 864.634 kb on - strandat 864.671 kb on - strandat 864.671 kb on - strandat 864.694 kb on - strandat 864.757 kb on - strandat 864.963 kb on + strand, within RR42_RS24640at 865.095 kb on + strand, within RR42_RS24640at 865.402 kb on + strand, within RR42_RS24640at 865.402 kb on + strand, within RR42_RS24640at 865.402 kb on + strand, within RR42_RS24640at 865.724 kb on - strand, within RR42_RS24640at 865.799 kb on - strand, within RR42_RS24640at 865.906 kb on + strand, within RR42_RS24640at 865.907 kb on - strand, within RR42_RS24640at 865.907 kb on - strand, within RR42_RS24640at 865.907 kb on - strand, within RR42_RS24640at 865.977 kb on + strand, within RR42_RS24640at 865.978 kb on - strand, within RR42_RS24640at 866.029 kb on + strand, within RR42_RS24640at 866.029 kb on + strand, within RR42_RS24640at 866.104 kb on + strandat 866.105 kb on - strandat 866.278 kb on - strand, within RR42_RS24645at 866.293 kb on - strand, within RR42_RS24645at 866.308 kb on + strand, within RR42_RS24645at 866.308 kb on + strand, within RR42_RS24645at 866.309 kb on - strand, within RR42_RS24645at 866.457 kb on + strand, within RR42_RS24645at 866.457 kb on + strand, within RR42_RS24645at 866.457 kb on + strand, within RR42_RS24645at 866.458 kb on - strand, within RR42_RS24645at 866.700 kb on + strand, within RR42_RS24645at 866.968 kb on - strandat 866.968 kb on - strandat 866.986 kb on + strandat 867.037 kb on + strandat 867.170 kb on + strandat 867.170 kb on + strandat 867.170 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
remove
863,689 + RR42_RS24630 0.82 +0.0
863,731 + RR42_RS24630 0.84 +0.1
863,732 - RR42_RS24630 0.84 -0.4
863,732 - RR42_RS24630 0.84 -0.2
863,887 + -0.3
863,888 - +0.7
863,970 - -0.1
864,037 + -0.8
864,038 - -0.9
864,066 + +0.9
864,082 - RR42_RS24635 0.11 -0.6
864,189 + RR42_RS24635 0.28 -1.1
864,216 + RR42_RS24635 0.32 -0.3
864,217 - RR42_RS24635 0.32 -0.5
864,489 + RR42_RS24635 0.75 -0.3
864,520 - RR42_RS24635 0.80 -0.3
864,615 - -0.2
864,634 - -0.5
864,634 - -1.4
864,671 - -0.1
864,671 - -0.5
864,694 - -0.7
864,757 - +0.1
864,963 + RR42_RS24640 0.19 -0.1
865,095 + RR42_RS24640 0.27 -0.9
865,402 + RR42_RS24640 0.48 -2.8
865,402 + RR42_RS24640 0.48 -1.0
865,402 + RR42_RS24640 0.48 -1.1
865,724 - RR42_RS24640 0.69 -0.3
865,799 - RR42_RS24640 0.74 -0.4
865,906 + RR42_RS24640 0.82 -0.8
865,907 - RR42_RS24640 0.82 +0.3
865,907 - RR42_RS24640 0.82 +0.1
865,907 - RR42_RS24640 0.82 -1.0
865,977 + RR42_RS24640 0.86 -0.0
865,978 - RR42_RS24640 0.86 +0.7
866,029 + RR42_RS24640 0.90 -0.5
866,029 + RR42_RS24640 0.90 +0.2
866,104 + +0.0
866,105 - -0.6
866,278 - RR42_RS24645 0.14 -0.9
866,293 - RR42_RS24645 0.16 +0.2
866,308 + RR42_RS24645 0.19 -0.6
866,308 + RR42_RS24645 0.19 +0.0
866,309 - RR42_RS24645 0.19 -0.9
866,457 + RR42_RS24645 0.41 -1.1
866,457 + RR42_RS24645 0.41 -0.2
866,457 + RR42_RS24645 0.41 +0.1
866,458 - RR42_RS24645 0.41 +0.8
866,700 + RR42_RS24645 0.76 -1.2
866,968 - -0.0
866,968 - -0.2
866,986 + +0.3
867,037 + +0.1
867,170 + +0.2
867,170 + +0.1
867,170 + -0.0

Or see this region's nucleotide sequence