Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS24580

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS24575 and RR42_RS24580 are separated by 59 nucleotidesRR42_RS24580 and RR42_RS24585 are separated by 77 nucleotides RR42_RS24575: RR42_RS24575 - endoribonuclease L-PSP, at 846,981 to 847,394 _RS24575 RR42_RS24580: RR42_RS24580 - hypothetical protein, at 847,454 to 848,818 _RS24580 RR42_RS24585: RR42_RS24585 - hypothetical protein, at 848,896 to 850,731 _RS24585 Position (kb) 847 848 849Strain fitness (log2 ratio) -2 -1 0 1at 846.650 kb on - strandat 846.915 kb on - strandat 846.961 kb on + strandat 846.995 kb on + strandat 847.035 kb on + strand, within RR42_RS24575at 847.036 kb on - strand, within RR42_RS24575at 847.282 kb on - strand, within RR42_RS24575at 847.437 kb on - strandat 847.500 kb on + strandat 847.500 kb on + strandat 847.501 kb on - strandat 847.580 kb on - strandat 847.638 kb on - strand, within RR42_RS24580at 847.709 kb on + strand, within RR42_RS24580at 847.709 kb on + strand, within RR42_RS24580at 847.710 kb on - strandat 847.710 kb on - strand, within RR42_RS24580at 847.778 kb on + strand, within RR42_RS24580at 847.828 kb on + strand, within RR42_RS24580at 847.943 kb on + strand, within RR42_RS24580at 847.943 kb on + strand, within RR42_RS24580at 847.943 kb on + strand, within RR42_RS24580at 847.943 kb on + strand, within RR42_RS24580at 847.944 kb on - strand, within RR42_RS24580at 847.945 kb on + strand, within RR42_RS24580at 847.945 kb on + strand, within RR42_RS24580at 847.945 kb on + strand, within RR42_RS24580at 847.945 kb on + strand, within RR42_RS24580at 847.946 kb on - strand, within RR42_RS24580at 847.946 kb on - strand, within RR42_RS24580at 847.950 kb on - strand, within RR42_RS24580at 847.950 kb on - strand, within RR42_RS24580at 847.950 kb on - strand, within RR42_RS24580at 847.950 kb on - strand, within RR42_RS24580at 847.950 kb on - strand, within RR42_RS24580at 848.177 kb on + strand, within RR42_RS24580at 848.178 kb on - strand, within RR42_RS24580at 848.204 kb on + strand, within RR42_RS24580at 848.204 kb on + strand, within RR42_RS24580at 848.205 kb on - strand, within RR42_RS24580at 848.207 kb on + strand, within RR42_RS24580at 848.286 kb on - strand, within RR42_RS24580at 848.372 kb on + strand, within RR42_RS24580at 848.372 kb on + strand, within RR42_RS24580at 848.390 kb on + strand, within RR42_RS24580at 848.391 kb on - strand, within RR42_RS24580at 848.391 kb on - strand, within RR42_RS24580at 848.391 kb on - strand, within RR42_RS24580at 848.534 kb on + strand, within RR42_RS24580at 848.535 kb on - strand, within RR42_RS24580at 848.535 kb on - strand, within RR42_RS24580at 848.576 kb on + strand, within RR42_RS24580at 848.576 kb on + strand, within RR42_RS24580at 848.577 kb on - strand, within RR42_RS24580at 848.672 kb on + strand, within RR42_RS24580at 848.672 kb on + strand, within RR42_RS24580at 848.694 kb on - strandat 848.968 kb on + strandat 848.969 kb on - strandat 849.020 kb on + strandat 849.176 kb on - strand, within RR42_RS24585at 849.184 kb on + strand, within RR42_RS24585at 849.262 kb on + strand, within RR42_RS24585at 849.370 kb on - strand, within RR42_RS24585at 849.580 kb on + strand, within RR42_RS24585at 849.580 kb on + strand, within RR42_RS24585at 849.581 kb on - strand, within RR42_RS24585

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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846,650 - +1.3
846,915 - -0.4
846,961 + +0.2
846,995 + +0.6
847,035 + RR42_RS24575 0.13 +0.1
847,036 - RR42_RS24575 0.13 -0.3
847,282 - RR42_RS24575 0.73 +0.0
847,437 - -0.2
847,500 + +0.8
847,500 + -0.2
847,501 - -0.6
847,580 - +0.1
847,638 - RR42_RS24580 0.13 -0.4
847,709 + RR42_RS24580 0.19 -1.6
847,709 + RR42_RS24580 0.19 -0.3
847,710 - +0.8
847,710 - RR42_RS24580 0.19 +0.5
847,778 + RR42_RS24580 0.24 -0.6
847,828 + RR42_RS24580 0.27 +0.4
847,943 + RR42_RS24580 0.36 +0.0
847,943 + RR42_RS24580 0.36 +0.5
847,943 + RR42_RS24580 0.36 -2.0
847,943 + RR42_RS24580 0.36 +0.2
847,944 - RR42_RS24580 0.36 -0.1
847,945 + RR42_RS24580 0.36 -0.2
847,945 + RR42_RS24580 0.36 +0.0
847,945 + RR42_RS24580 0.36 -0.7
847,945 + RR42_RS24580 0.36 +0.6
847,946 - RR42_RS24580 0.36 -0.1
847,946 - RR42_RS24580 0.36 +0.0
847,950 - RR42_RS24580 0.36 +0.0
847,950 - RR42_RS24580 0.36 -0.9
847,950 - RR42_RS24580 0.36 +0.4
847,950 - RR42_RS24580 0.36 -0.3
847,950 - RR42_RS24580 0.36 +1.4
848,177 + RR42_RS24580 0.53 -2.5
848,178 - RR42_RS24580 0.53 -0.9
848,204 + RR42_RS24580 0.55 +0.2
848,204 + RR42_RS24580 0.55 -0.3
848,205 - RR42_RS24580 0.55 +0.1
848,207 + RR42_RS24580 0.55 -2.0
848,286 - RR42_RS24580 0.61 -0.5
848,372 + RR42_RS24580 0.67 -0.5
848,372 + RR42_RS24580 0.67 -0.4
848,390 + RR42_RS24580 0.69 +0.2
848,391 - RR42_RS24580 0.69 -1.5
848,391 - RR42_RS24580 0.69 -1.8
848,391 - RR42_RS24580 0.69 -0.0
848,534 + RR42_RS24580 0.79 +0.6
848,535 - RR42_RS24580 0.79 -0.2
848,535 - RR42_RS24580 0.79 +0.2
848,576 + RR42_RS24580 0.82 -0.1
848,576 + RR42_RS24580 0.82 -0.8
848,577 - RR42_RS24580 0.82 +0.2
848,672 + RR42_RS24580 0.89 +0.0
848,672 + RR42_RS24580 0.89 +0.3
848,694 - +1.6
848,968 + -0.8
848,969 - +0.1
849,020 + -1.0
849,176 - RR42_RS24585 0.15 -2.7
849,184 + RR42_RS24585 0.16 -0.7
849,262 + RR42_RS24585 0.20 +0.0
849,370 - RR42_RS24585 0.26 -0.1
849,580 + RR42_RS24585 0.37 +0.0
849,580 + RR42_RS24585 0.37 -1.5
849,581 - RR42_RS24585 0.37 -0.4

Or see this region's nucleotide sequence