Experiment: R2A with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS23915 and RR42_RS23920 overlap by 1 nucleotides RR42_RS23920 and RR42_RS23925 overlap by 4 nucleotides RR42_RS23925 and RR42_RS23930 are separated by 272 nucleotides RR42_RS23930 and RR42_RS23935 are separated by 140 nucleotides
RR42_RS23915: RR42_RS23915 - hypothetical protein, at 692,394 to 692,870
_RS23915
RR42_RS23920: RR42_RS23920 - hypothetical protein, at 692,870 to 693,496
_RS23920
RR42_RS23925: RR42_RS23925 - conjugal transfer protein, at 693,493 to 694,548
_RS23925
RR42_RS23930: RR42_RS23930 - hypothetical protein, at 694,821 to 695,156
_RS23930
RR42_RS23935: RR42_RS23935 - hypothetical protein, at 695,297 to 696,442
_RS23935
Position (kb) 693
694
695 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 692.668 kb on - strand, within RR42_RS23915 at 692.901 kb on + strand at 692.901 kb on + strand at 692.905 kb on - strand at 692.909 kb on - strand at 692.964 kb on - strand, within RR42_RS23920 at 693.138 kb on - strand, within RR42_RS23920 at 693.354 kb on - strand, within RR42_RS23920 at 693.392 kb on + strand, within RR42_RS23920 at 693.438 kb on + strand at 693.438 kb on + strand at 693.438 kb on + strand at 693.639 kb on + strand, within RR42_RS23925 at 693.818 kb on + strand, within RR42_RS23925 at 693.819 kb on - strand, within RR42_RS23925 at 693.931 kb on + strand, within RR42_RS23925 at 693.932 kb on - strand, within RR42_RS23925 at 693.946 kb on + strand, within RR42_RS23925 at 693.946 kb on + strand, within RR42_RS23925 at 693.947 kb on - strand, within RR42_RS23925 at 694.025 kb on - strand, within RR42_RS23925 at 694.025 kb on - strand, within RR42_RS23925 at 694.204 kb on + strand, within RR42_RS23925 at 694.204 kb on + strand, within RR42_RS23925 at 694.205 kb on - strand, within RR42_RS23925 at 694.339 kb on + strand, within RR42_RS23925 at 694.339 kb on + strand, within RR42_RS23925 at 694.340 kb on - strand, within RR42_RS23925 at 694.340 kb on - strand, within RR42_RS23925 at 694.372 kb on + strand, within RR42_RS23925 at 694.373 kb on - strand, within RR42_RS23925 at 694.373 kb on - strand, within RR42_RS23925 at 694.390 kb on + strand, within RR42_RS23925 at 694.391 kb on - strand, within RR42_RS23925 at 694.391 kb on - strand, within RR42_RS23925 at 694.504 kb on + strand at 694.555 kb on + strand at 694.828 kb on + strand at 694.828 kb on + strand at 694.829 kb on - strand at 694.829 kb on - strand at 695.289 kb on + strand at 695.450 kb on + strand, within RR42_RS23935 at 695.451 kb on - strand, within RR42_RS23935 at 695.452 kb on + strand, within RR42_RS23935 at 695.453 kb on - strand, within RR42_RS23935 at 695.480 kb on + strand, within RR42_RS23935
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol% remove 692,668 - RR42_RS23915 0.57 +0.4 692,901 + +0.1 692,901 + +0.9 692,905 - -0.7 692,909 - -0.0 692,964 - RR42_RS23920 0.15 -1.4 693,138 - RR42_RS23920 0.43 -2.0 693,354 - RR42_RS23920 0.77 +0.2 693,392 + RR42_RS23920 0.83 -1.3 693,438 + +0.7 693,438 + -0.4 693,438 + -0.9 693,639 + RR42_RS23925 0.14 -0.5 693,818 + RR42_RS23925 0.31 +0.1 693,819 - RR42_RS23925 0.31 +1.5 693,931 + RR42_RS23925 0.41 -0.3 693,932 - RR42_RS23925 0.42 +0.7 693,946 + RR42_RS23925 0.43 +0.0 693,946 + RR42_RS23925 0.43 +0.1 693,947 - RR42_RS23925 0.43 +1.0 694,025 - RR42_RS23925 0.50 +0.4 694,025 - RR42_RS23925 0.50 +0.3 694,204 + RR42_RS23925 0.67 +0.0 694,204 + RR42_RS23925 0.67 -0.4 694,205 - RR42_RS23925 0.67 +0.1 694,339 + RR42_RS23925 0.80 +0.1 694,339 + RR42_RS23925 0.80 -0.4 694,340 - RR42_RS23925 0.80 +0.1 694,340 - RR42_RS23925 0.80 -0.5 694,372 + RR42_RS23925 0.83 -2.9 694,373 - RR42_RS23925 0.83 +0.3 694,373 - RR42_RS23925 0.83 -0.2 694,390 + RR42_RS23925 0.85 +0.3 694,391 - RR42_RS23925 0.85 -2.0 694,391 - RR42_RS23925 0.85 -0.1 694,504 + +0.9 694,555 + +0.4 694,828 + +1.4 694,828 + -0.3 694,829 - +0.5 694,829 - +0.4 695,289 + -0.2 695,450 + RR42_RS23935 0.13 +0.4 695,451 - RR42_RS23935 0.13 -1.7 695,452 + RR42_RS23935 0.14 -0.9 695,453 - RR42_RS23935 0.14 +0.2 695,480 + RR42_RS23935 0.16 +0.6
Or see this region's nucleotide sequence