Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23800

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23795 and RR42_RS23800 are separated by 331 nucleotidesRR42_RS23800 and RR42_RS23805 are separated by 407 nucleotides RR42_RS23795: RR42_RS23795 - hypothetical protein, at 662,441 to 666,097 _RS23795 RR42_RS23800: RR42_RS23800 - hypothetical protein, at 666,429 to 666,728 _RS23800 RR42_RS23805: RR42_RS23805 - hypothetical protein, at 667,136 to 669,109 _RS23805 Position (kb) 666 667Strain fitness (log2 ratio) -2 -1 0 1at 665.469 kb on + strand, within RR42_RS23795at 665.469 kb on + strand, within RR42_RS23795at 665.470 kb on - strand, within RR42_RS23795at 665.470 kb on - strand, within RR42_RS23795at 665.548 kb on - strand, within RR42_RS23795at 665.637 kb on + strand, within RR42_RS23795at 665.637 kb on + strand, within RR42_RS23795at 665.660 kb on + strand, within RR42_RS23795at 665.661 kb on - strand, within RR42_RS23795at 665.661 kb on - strand, within RR42_RS23795at 665.715 kb on + strand, within RR42_RS23795at 665.739 kb on + strandat 665.740 kb on - strandat 665.813 kb on + strandat 665.813 kb on + strandat 665.813 kb on + strandat 665.814 kb on - strandat 665.871 kb on + strandat 665.871 kb on + strandat 665.910 kb on - strandat 665.910 kb on - strandat 666.106 kb on + strandat 666.117 kb on + strandat 666.117 kb on + strandat 666.118 kb on - strandat 666.131 kb on + strandat 666.151 kb on + strandat 666.152 kb on - strandat 666.152 kb on - strandat 666.169 kb on + strandat 666.177 kb on - strandat 666.208 kb on + strandat 666.282 kb on - strandat 666.282 kb on - strandat 666.282 kb on - strandat 666.282 kb on - strandat 666.340 kb on + strandat 666.340 kb on + strandat 666.340 kb on + strandat 666.360 kb on + strandat 666.361 kb on - strandat 666.376 kb on + strandat 666.377 kb on - strandat 666.436 kb on + strandat 666.437 kb on - strandat 666.459 kb on + strand, within RR42_RS23800at 666.459 kb on + strand, within RR42_RS23800at 666.460 kb on - strand, within RR42_RS23800at 666.460 kb on - strand, within RR42_RS23800at 666.491 kb on + strand, within RR42_RS23800at 666.524 kb on - strand, within RR42_RS23800at 666.524 kb on - strand, within RR42_RS23800at 666.524 kb on - strand, within RR42_RS23800at 666.528 kb on + strand, within RR42_RS23800at 666.529 kb on - strand, within RR42_RS23800at 666.529 kb on - strand, within RR42_RS23800at 666.529 kb on - strand, within RR42_RS23800at 666.577 kb on + strand, within RR42_RS23800at 666.577 kb on + strand, within RR42_RS23800at 666.577 kb on + strand, within RR42_RS23800at 666.578 kb on - strand, within RR42_RS23800at 666.592 kb on + strand, within RR42_RS23800at 666.593 kb on - strand, within RR42_RS23800at 666.685 kb on - strand, within RR42_RS23800at 666.706 kb on - strandat 666.706 kb on - strandat 666.878 kb on - strandat 666.901 kb on - strandat 666.962 kb on - strandat 666.962 kb on - strandat 666.970 kb on + strandat 666.971 kb on - strandat 667.000 kb on + strandat 667.000 kb on + strandat 667.001 kb on - strandat 667.041 kb on + strandat 667.041 kb on + strandat 667.042 kb on - strandat 667.042 kb on - strandat 667.042 kb on - strandat 667.051 kb on + strandat 667.051 kb on + strandat 667.051 kb on + strandat 667.052 kb on - strandat 667.052 kb on - strandat 667.052 kb on - strandat 667.057 kb on + strandat 667.057 kb on + strandat 667.057 kb on + strandat 667.058 kb on - strandat 667.058 kb on - strandat 667.058 kb on - strandat 667.058 kb on - strandat 667.058 kb on - strandat 667.288 kb on - strandat 667.288 kb on - strandat 667.288 kb on - strandat 667.513 kb on + strand, within RR42_RS23805at 667.513 kb on + strand, within RR42_RS23805at 667.659 kb on - strand, within RR42_RS23805

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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665,469 + RR42_RS23795 0.83 +0.5
665,469 + RR42_RS23795 0.83 +0.4
665,470 - RR42_RS23795 0.83 +1.0
665,470 - RR42_RS23795 0.83 +0.7
665,548 - RR42_RS23795 0.85 +0.4
665,637 + RR42_RS23795 0.87 +0.4
665,637 + RR42_RS23795 0.87 +0.5
665,660 + RR42_RS23795 0.88 -1.0
665,661 - RR42_RS23795 0.88 +0.1
665,661 - RR42_RS23795 0.88 +0.6
665,715 + RR42_RS23795 0.90 +0.1
665,739 + +0.1
665,740 - +0.3
665,813 + +0.2
665,813 + +1.2
665,813 + -0.4
665,814 - +0.4
665,871 + +0.1
665,871 + -0.4
665,910 - -0.0
665,910 - +1.5
666,106 + +0.1
666,117 + -2.3
666,117 + +0.6
666,118 - -0.3
666,131 + +0.8
666,151 + -1.3
666,152 - +0.6
666,152 - +0.3
666,169 + -0.4
666,177 - +0.5
666,208 + +0.7
666,282 - -1.2
666,282 - -0.0
666,282 - -1.4
666,282 - +0.4
666,340 + +1.1
666,340 + -0.3
666,340 + +1.4
666,360 + +0.4
666,361 - -0.7
666,376 + -0.8
666,377 - +0.6
666,436 + -1.0
666,437 - -0.0
666,459 + RR42_RS23800 0.10 -0.2
666,459 + RR42_RS23800 0.10 +0.2
666,460 - RR42_RS23800 0.10 -0.1
666,460 - RR42_RS23800 0.10 -0.4
666,491 + RR42_RS23800 0.21 -0.5
666,524 - RR42_RS23800 0.32 +0.4
666,524 - RR42_RS23800 0.32 +1.0
666,524 - RR42_RS23800 0.32 -0.5
666,528 + RR42_RS23800 0.33 -0.2
666,529 - RR42_RS23800 0.33 +0.5
666,529 - RR42_RS23800 0.33 -0.2
666,529 - RR42_RS23800 0.33 +0.2
666,577 + RR42_RS23800 0.49 -0.4
666,577 + RR42_RS23800 0.49 +0.6
666,577 + RR42_RS23800 0.49 +1.5
666,578 - RR42_RS23800 0.50 +0.2
666,592 + RR42_RS23800 0.54 +0.7
666,593 - RR42_RS23800 0.55 +0.2
666,685 - RR42_RS23800 0.85 -0.2
666,706 - +1.2
666,706 - +0.8
666,878 - +1.3
666,901 - +0.8
666,962 - -0.1
666,962 - +0.1
666,970 + +0.0
666,971 - +0.5
667,000 + -0.6
667,000 + -0.5
667,001 - -0.8
667,041 + +1.0
667,041 + -0.1
667,042 - -2.0
667,042 - +0.3
667,042 - -0.9
667,051 + -1.5
667,051 + -0.2
667,051 + -0.0
667,052 - +0.2
667,052 - +0.9
667,052 - +1.1
667,057 + +1.4
667,057 + +1.1
667,057 + +1.2
667,058 - -0.1
667,058 - +0.9
667,058 - +0.4
667,058 - +0.5
667,058 - +1.6
667,288 - -0.1
667,288 - -0.2
667,288 - +0.3
667,513 + RR42_RS23805 0.19 +0.2
667,513 + RR42_RS23805 0.19 +1.1
667,659 - RR42_RS23805 0.26 -1.4

Or see this region's nucleotide sequence