Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS23785

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS23780 and RR42_RS23785 are separated by 305 nucleotidesRR42_RS23785 and RR42_RS23790 are separated by 385 nucleotides RR42_RS23780: RR42_RS23780 - hypothetical protein, at 658,815 to 659,753 _RS23780 RR42_RS23785: RR42_RS23785 - hypothetical protein, at 660,059 to 660,319 _RS23785 RR42_RS23790: RR42_RS23790 - hypothetical protein, at 660,705 to 662,045 _RS23790 Position (kb) 660 661Strain fitness (log2 ratio) -2 -1 0 1at 659.117 kb on - strand, within RR42_RS23780at 659.124 kb on + strand, within RR42_RS23780at 659.125 kb on - strand, within RR42_RS23780at 659.129 kb on + strand, within RR42_RS23780at 659.129 kb on + strand, within RR42_RS23780at 659.129 kb on + strand, within RR42_RS23780at 659.130 kb on - strand, within RR42_RS23780at 659.263 kb on + strand, within RR42_RS23780at 659.304 kb on + strand, within RR42_RS23780at 659.304 kb on + strand, within RR42_RS23780at 659.305 kb on - strand, within RR42_RS23780at 659.306 kb on + strand, within RR42_RS23780at 659.307 kb on - strand, within RR42_RS23780at 659.558 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.656 kb on - strand, within RR42_RS23780at 659.819 kb on + strandat 659.819 kb on + strandat 659.819 kb on + strandat 659.903 kb on - strandat 659.903 kb on - strandat 659.903 kb on - strandat 659.934 kb on + strandat 660.068 kb on - strandat 660.075 kb on - strandat 660.095 kb on + strand, within RR42_RS23785at 660.190 kb on + strand, within RR42_RS23785at 660.190 kb on + strand, within RR42_RS23785at 660.191 kb on - strand, within RR42_RS23785at 660.191 kb on - strand, within RR42_RS23785at 660.191 kb on - strand, within RR42_RS23785at 660.193 kb on - strand, within RR42_RS23785at 660.215 kb on + strand, within RR42_RS23785at 660.215 kb on + strand, within RR42_RS23785at 660.216 kb on - strand, within RR42_RS23785at 660.216 kb on - strand, within RR42_RS23785at 660.317 kb on + strandat 660.320 kb on + strandat 660.321 kb on - strandat 660.329 kb on - strandat 660.330 kb on + strandat 660.330 kb on + strandat 660.331 kb on - strandat 660.331 kb on - strandat 660.380 kb on + strandat 660.381 kb on - strandat 660.381 kb on - strandat 660.426 kb on + strandat 660.426 kb on + strandat 660.533 kb on + strandat 660.534 kb on - strandat 660.534 kb on - strandat 660.536 kb on + strandat 660.536 kb on + strandat 660.536 kb on + strandat 660.537 kb on - strandat 660.547 kb on - strandat 660.589 kb on - strandat 660.589 kb on - strandat 660.678 kb on + strandat 660.678 kb on + strandat 660.678 kb on + strandat 660.678 kb on + strandat 660.679 kb on - strandat 660.777 kb on + strandat 660.778 kb on - strandat 660.801 kb on + strandat 660.801 kb on + strandat 660.801 kb on + strandat 660.801 kb on + strandat 660.801 kb on + strandat 660.802 kb on - strandat 660.802 kb on - strandat 660.802 kb on - strandat 660.802 kb on - strandat 660.804 kb on - strandat 660.832 kb on + strandat 660.832 kb on + strandat 660.832 kb on + strandat 660.833 kb on - strandat 660.833 kb on - strandat 660.833 kb on - strandat 660.907 kb on - strand, within RR42_RS23790at 661.007 kb on - strand, within RR42_RS23790at 661.074 kb on + strand, within RR42_RS23790at 661.160 kb on + strand, within RR42_RS23790at 661.239 kb on + strand, within RR42_RS23790

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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659,117 - RR42_RS23780 0.32 -0.1
659,124 + RR42_RS23780 0.33 -0.1
659,125 - RR42_RS23780 0.33 -2.0
659,129 + RR42_RS23780 0.33 -1.7
659,129 + RR42_RS23780 0.33 +1.3
659,129 + RR42_RS23780 0.33 -0.9
659,130 - RR42_RS23780 0.34 -0.1
659,263 + RR42_RS23780 0.48 -0.9
659,304 + RR42_RS23780 0.52 -0.9
659,304 + RR42_RS23780 0.52 +0.1
659,305 - RR42_RS23780 0.52 +0.1
659,306 + RR42_RS23780 0.52 -0.6
659,307 - RR42_RS23780 0.52 -0.6
659,558 - RR42_RS23780 0.79 -0.8
659,656 - RR42_RS23780 0.90 -0.1
659,656 - RR42_RS23780 0.90 -0.1
659,656 - RR42_RS23780 0.90 -1.0
659,656 - RR42_RS23780 0.90 +0.7
659,656 - RR42_RS23780 0.90 -0.2
659,656 - RR42_RS23780 0.90 +0.3
659,656 - RR42_RS23780 0.90 +0.6
659,819 + -0.2
659,819 + -0.4
659,819 + -0.0
659,903 - -0.9
659,903 - -0.1
659,903 - -1.9
659,934 + -0.1
660,068 - -0.2
660,075 - -1.0
660,095 + RR42_RS23785 0.14 -0.1
660,190 + RR42_RS23785 0.50 -0.3
660,190 + RR42_RS23785 0.50 +1.1
660,191 - RR42_RS23785 0.51 -0.3
660,191 - RR42_RS23785 0.51 -0.1
660,191 - RR42_RS23785 0.51 +0.2
660,193 - RR42_RS23785 0.51 -2.5
660,215 + RR42_RS23785 0.60 -0.3
660,215 + RR42_RS23785 0.60 +0.1
660,216 - RR42_RS23785 0.60 -0.0
660,216 - RR42_RS23785 0.60 -0.5
660,317 + +0.9
660,320 + +0.4
660,321 - +1.7
660,329 - -0.6
660,330 + +1.0
660,330 + +0.1
660,331 - +0.3
660,331 - -0.5
660,380 + +0.4
660,381 - +0.1
660,381 - -0.3
660,426 + +0.5
660,426 + +0.7
660,533 + -0.3
660,534 - +1.2
660,534 - +0.5
660,536 + -0.3
660,536 + +0.5
660,536 + +0.6
660,537 - +0.1
660,547 - -0.3
660,589 - -0.1
660,589 - +0.2
660,678 + +1.0
660,678 + +1.4
660,678 + +0.0
660,678 + +0.2
660,679 - +0.3
660,777 + -0.5
660,778 - +0.3
660,801 + -0.6
660,801 + -0.7
660,801 + +0.1
660,801 + -0.2
660,801 + +0.4
660,802 - +0.4
660,802 - +0.0
660,802 - +0.2
660,802 - +0.7
660,804 - -0.5
660,832 + +0.3
660,832 + +0.5
660,832 + -0.1
660,833 - +0.4
660,833 - +0.1
660,833 - +0.6
660,907 - RR42_RS23790 0.15 -1.4
661,007 - RR42_RS23790 0.23 +0.1
661,074 + RR42_RS23790 0.28 -1.1
661,160 + RR42_RS23790 0.34 +0.4
661,239 + RR42_RS23790 0.40 +0.2

Or see this region's nucleotide sequence