Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS21065

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS21060 and RR42_RS21065 are separated by 53 nucleotidesRR42_RS21065 and RR42_RS21070 are separated by 526 nucleotides RR42_RS21060: RR42_RS21060 - histidine kinase, at 49,245 to 51,272 _RS21060 RR42_RS21065: RR42_RS21065 - diguanylate phosphodiesterase, at 51,326 to 52,942 _RS21065 RR42_RS21070: RR42_RS21070 - hypothetical protein, at 53,469 to 53,651 _RS21070 Position (kb) 51 52 53Strain fitness (log2 ratio) -2 -1 0 1 2 3at 50.514 kb on + strand, within RR42_RS21060at 50.515 kb on - strand, within RR42_RS21060at 50.515 kb on - strand, within RR42_RS21060at 50.515 kb on - strand, within RR42_RS21060at 50.836 kb on + strand, within RR42_RS21060at 50.836 kb on + strand, within RR42_RS21060at 50.969 kb on - strand, within RR42_RS21060at 50.986 kb on - strand, within RR42_RS21060at 50.986 kb on - strand, within RR42_RS21060at 50.986 kb on - strand, within RR42_RS21060at 50.986 kb on - strand, within RR42_RS21060at 51.034 kb on + strand, within RR42_RS21060at 51.143 kb on + strandat 51.143 kb on + strandat 51.144 kb on - strandat 51.144 kb on - strandat 51.144 kb on - strandat 51.144 kb on - strandat 51.145 kb on + strandat 51.146 kb on - strandat 51.146 kb on - strandat 51.357 kb on + strandat 51.539 kb on + strand, within RR42_RS21065at 51.539 kb on + strand, within RR42_RS21065at 51.540 kb on - strand, within RR42_RS21065at 51.540 kb on - strand, within RR42_RS21065at 51.548 kb on + strand, within RR42_RS21065at 51.548 kb on + strand, within RR42_RS21065at 51.548 kb on + strand, within RR42_RS21065at 51.551 kb on - strand, within RR42_RS21065at 51.588 kb on - strand, within RR42_RS21065at 51.588 kb on - strand, within RR42_RS21065at 51.735 kb on + strand, within RR42_RS21065at 51.736 kb on - strand, within RR42_RS21065at 51.758 kb on + strand, within RR42_RS21065at 51.759 kb on - strand, within RR42_RS21065at 52.032 kb on + strand, within RR42_RS21065at 52.033 kb on - strand, within RR42_RS21065at 52.052 kb on + strand, within RR42_RS21065at 52.052 kb on + strand, within RR42_RS21065at 52.052 kb on + strand, within RR42_RS21065at 52.052 kb on + strand, within RR42_RS21065at 52.053 kb on - strand, within RR42_RS21065at 52.053 kb on - strand, within RR42_RS21065at 52.184 kb on + strand, within RR42_RS21065at 52.188 kb on - strand, within RR42_RS21065at 52.188 kb on - strand, within RR42_RS21065at 52.823 kb on + strandat 52.823 kb on + strandat 52.824 kb on - strandat 53.033 kb on + strandat 53.034 kb on - strandat 53.034 kb on - strandat 53.100 kb on - strandat 53.172 kb on + strandat 53.207 kb on + strandat 53.207 kb on + strandat 53.208 kb on - strandat 53.208 kb on - strandat 53.249 kb on + strandat 53.332 kb on - strandat 53.470 kb on + strandat 53.471 kb on - strandat 53.489 kb on - strand, within RR42_RS21070at 53.489 kb on - strand, within RR42_RS21070at 53.522 kb on + strand, within RR42_RS21070at 53.523 kb on - strand, within RR42_RS21070at 53.523 kb on - strand, within RR42_RS21070at 53.580 kb on + strand, within RR42_RS21070at 53.581 kb on - strand, within RR42_RS21070at 53.581 kb on - strand, within RR42_RS21070at 53.645 kb on + strandat 53.645 kb on + strandat 53.646 kb on - strandat 53.646 kb on - strandat 53.646 kb on - strandat 53.776 kb on - strandat 53.794 kb on + strandat 53.794 kb on + strandat 53.795 kb on - strandat 53.795 kb on - strandat 53.795 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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50,514 + RR42_RS21060 0.63 +0.4
50,515 - RR42_RS21060 0.63 -0.6
50,515 - RR42_RS21060 0.63 -0.5
50,515 - RR42_RS21060 0.63 -0.8
50,836 + RR42_RS21060 0.78 +0.0
50,836 + RR42_RS21060 0.78 -0.3
50,969 - RR42_RS21060 0.85 +0.1
50,986 - RR42_RS21060 0.86 +0.1
50,986 - RR42_RS21060 0.86 +0.3
50,986 - RR42_RS21060 0.86 -0.7
50,986 - RR42_RS21060 0.86 -0.3
51,034 + RR42_RS21060 0.88 -0.8
51,143 + -0.8
51,143 + -0.6
51,144 - +0.2
51,144 - -0.4
51,144 - -0.5
51,144 - -0.2
51,145 + -0.2
51,146 - -0.1
51,146 - -0.0
51,357 + +0.5
51,539 + RR42_RS21065 0.13 -0.2
51,539 + RR42_RS21065 0.13 -0.1
51,540 - RR42_RS21065 0.13 +0.0
51,540 - RR42_RS21065 0.13 +0.0
51,548 + RR42_RS21065 0.14 -0.6
51,548 + RR42_RS21065 0.14 +2.1
51,548 + RR42_RS21065 0.14 -0.0
51,551 - RR42_RS21065 0.14 -1.4
51,588 - RR42_RS21065 0.16 -0.8
51,588 - RR42_RS21065 0.16 -0.8
51,735 + RR42_RS21065 0.25 -1.0
51,736 - RR42_RS21065 0.25 -0.1
51,758 + RR42_RS21065 0.27 -1.0
51,759 - RR42_RS21065 0.27 -1.5
52,032 + RR42_RS21065 0.44 -0.5
52,033 - RR42_RS21065 0.44 -0.8
52,052 + RR42_RS21065 0.45 -1.6
52,052 + RR42_RS21065 0.45 -0.9
52,052 + RR42_RS21065 0.45 -0.5
52,052 + RR42_RS21065 0.45 -0.4
52,053 - RR42_RS21065 0.45 -0.9
52,053 - RR42_RS21065 0.45 +0.4
52,184 + RR42_RS21065 0.53 +0.4
52,188 - RR42_RS21065 0.53 +3.2
52,188 - RR42_RS21065 0.53 -0.4
52,823 + +0.5
52,823 + -0.2
52,824 - +0.4
53,033 + -0.1
53,034 - -1.3
53,034 - +0.4
53,100 - -2.1
53,172 + -0.1
53,207 + -0.6
53,207 + -0.6
53,208 - +0.3
53,208 - +0.3
53,249 + +1.2
53,332 - +0.1
53,470 + -0.3
53,471 - -0.2
53,489 - RR42_RS21070 0.11 -0.5
53,489 - RR42_RS21070 0.11 +0.0
53,522 + RR42_RS21070 0.29 -0.3
53,523 - RR42_RS21070 0.30 -2.0
53,523 - RR42_RS21070 0.30 +0.1
53,580 + RR42_RS21070 0.61 -0.0
53,581 - RR42_RS21070 0.61 -0.6
53,581 - RR42_RS21070 0.61 -0.2
53,645 + +0.8
53,645 + +0.9
53,646 - +0.6
53,646 - -1.8
53,646 - -2.0
53,776 - -1.4
53,794 + +0.8
53,794 + -0.4
53,795 - -0.8
53,795 - -0.5
53,795 - -0.2

Or see this region's nucleotide sequence