Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS20030

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS20025 and RR42_RS20030 are separated by 207 nucleotidesRR42_RS20030 and RR42_RS20035 are separated by 30 nucleotides RR42_RS20025: RR42_RS20025 - coproporphyrinogen III oxidase, at 4,325,092 to 4,326,693 _RS20025 RR42_RS20030: RR42_RS20030 - ABC transporter permease, at 4,326,901 to 4,328,043 _RS20030 RR42_RS20035: RR42_RS20035 - histidine kinase, at 4,328,074 to 4,329,195 _RS20035 Position (kb) 4326 4327 4328 4329Strain fitness (log2 ratio) -1 0 1 2at 4326.270 kb on - strand, within RR42_RS20025at 4326.324 kb on - strand, within RR42_RS20025at 4326.356 kb on + strand, within RR42_RS20025at 4326.356 kb on + strand, within RR42_RS20025at 4326.356 kb on + strand, within RR42_RS20025at 4326.357 kb on - strand, within RR42_RS20025at 4326.357 kb on - strand, within RR42_RS20025at 4326.357 kb on - strand, within RR42_RS20025at 4326.357 kb on - strand, within RR42_RS20025at 4326.491 kb on + strand, within RR42_RS20025at 4326.508 kb on - strand, within RR42_RS20025at 4326.729 kb on + strandat 4327.082 kb on - strand, within RR42_RS20030at 4327.082 kb on - strand, within RR42_RS20030at 4327.409 kb on - strand, within RR42_RS20030at 4327.409 kb on - strand, within RR42_RS20030at 4327.409 kb on - strand, within RR42_RS20030at 4327.660 kb on + strand, within RR42_RS20030at 4327.726 kb on + strand, within RR42_RS20030at 4327.726 kb on + strand, within RR42_RS20030at 4327.727 kb on - strand, within RR42_RS20030at 4327.859 kb on - strand, within RR42_RS20030at 4327.859 kb on - strand, within RR42_RS20030at 4327.859 kb on - strand, within RR42_RS20030at 4328.228 kb on + strand, within RR42_RS20035at 4328.537 kb on + strand, within RR42_RS20035at 4328.537 kb on + strand, within RR42_RS20035at 4328.537 kb on + strand, within RR42_RS20035at 4328.538 kb on - strand, within RR42_RS20035at 4328.538 kb on - strand, within RR42_RS20035at 4328.538 kb on - strand, within RR42_RS20035at 4328.540 kb on + strand, within RR42_RS20035at 4328.540 kb on + strand, within RR42_RS20035at 4328.540 kb on + strand, within RR42_RS20035at 4328.540 kb on + strand, within RR42_RS20035at 4328.541 kb on - strand, within RR42_RS20035

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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4,326,270 - RR42_RS20025 0.74 -0.8
4,326,324 - RR42_RS20025 0.77 +1.3
4,326,356 + RR42_RS20025 0.79 -0.8
4,326,356 + RR42_RS20025 0.79 -1.1
4,326,356 + RR42_RS20025 0.79 -0.3
4,326,357 - RR42_RS20025 0.79 -0.9
4,326,357 - RR42_RS20025 0.79 -0.5
4,326,357 - RR42_RS20025 0.79 -0.5
4,326,357 - RR42_RS20025 0.79 -0.2
4,326,491 + RR42_RS20025 0.87 -1.7
4,326,508 - RR42_RS20025 0.88 -0.6
4,326,729 + +0.4
4,327,082 - RR42_RS20030 0.16 +1.6
4,327,082 - RR42_RS20030 0.16 -0.8
4,327,409 - RR42_RS20030 0.44 -0.3
4,327,409 - RR42_RS20030 0.44 -0.6
4,327,409 - RR42_RS20030 0.44 -0.4
4,327,660 + RR42_RS20030 0.66 +1.3
4,327,726 + RR42_RS20030 0.72 +0.3
4,327,726 + RR42_RS20030 0.72 +1.2
4,327,727 - RR42_RS20030 0.72 -0.9
4,327,859 - RR42_RS20030 0.84 +0.1
4,327,859 - RR42_RS20030 0.84 +0.1
4,327,859 - RR42_RS20030 0.84 +0.5
4,328,228 + RR42_RS20035 0.14 -0.4
4,328,537 + RR42_RS20035 0.41 -0.5
4,328,537 + RR42_RS20035 0.41 +0.5
4,328,537 + RR42_RS20035 0.41 +1.5
4,328,538 - RR42_RS20035 0.41 -0.9
4,328,538 - RR42_RS20035 0.41 -0.9
4,328,538 - RR42_RS20035 0.41 -0.2
4,328,540 + RR42_RS20035 0.42 +2.3
4,328,540 + RR42_RS20035 0.42 -1.6
4,328,540 + RR42_RS20035 0.42 -0.8
4,328,540 + RR42_RS20035 0.42 -0.4
4,328,541 - RR42_RS20035 0.42 -0.8

Or see this region's nucleotide sequence