Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS16205
Experiment: R2A with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | R2A with Dimethyl Sulfoxide 5 vol% |
---|---|---|---|---|---|
remove | |||||
3,507,846 | - | +0.0 | |||
3,507,846 | - | +0.0 | |||
3,507,853 | - | +1.8 | |||
3,507,857 | - | -0.6 | |||
3,507,857 | - | -0.3 | |||
3,507,977 | - | -0.6 | |||
3,507,977 | - | +0.6 | |||
3,508,128 | - | RR42_RS16205 | 0.22 | -1.6 | |
3,508,128 | - | RR42_RS16205 | 0.22 | -0.6 | |
3,508,128 | - | RR42_RS16205 | 0.22 | +1.0 | |
3,508,265 | + | RR42_RS16205 | 0.35 | -0.2 | |
3,508,266 | - | RR42_RS16205 | 0.35 | -0.8 | |
3,508,275 | + | RR42_RS16205 | 0.36 | +0.8 | |
3,508,275 | + | RR42_RS16205 | 0.36 | +1.2 | |
3,508,286 | + | RR42_RS16205 | 0.37 | -0.8 | |
3,508,287 | - | RR42_RS16205 | 0.37 | +0.1 | |
3,508,287 | - | RR42_RS16205 | 0.37 | +0.4 | |
3,508,287 | - | RR42_RS16205 | 0.37 | -0.9 | |
3,508,448 | + | RR42_RS16205 | 0.53 | +0.5 | |
3,508,449 | - | RR42_RS16205 | 0.53 | -0.5 | |
3,508,619 | + | RR42_RS16205 | 0.70 | -0.5 | |
3,508,620 | - | RR42_RS16205 | 0.70 | -0.5 | |
3,508,620 | - | RR42_RS16205 | 0.70 | -1.3 | |
3,508,879 | + | +0.5 | |||
3,508,879 | + | +0.6 | |||
3,508,879 | + | -0.5 | |||
3,508,879 | + | -0.6 | |||
3,508,879 | + | +0.3 | |||
3,508,904 | + | +0.1 |
Or see this region's nucleotide sequence