Experiment: R2A with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS16190 and RR42_RS16195 are separated by 198 nucleotides RR42_RS16195 and RR42_RS16200 are separated by 29 nucleotides RR42_RS16200 and RR42_RS16205 are separated by 71 nucleotides
RR42_RS16190: RR42_RS16190 - GntR family transcriptional regulator, at 3,505,359 to 3,506,108
_RS16190
RR42_RS16195: RR42_RS16195 - haloacid dehalogenase, at 3,506,307 to 3,506,990
_RS16195
RR42_RS16200: RR42_RS16200 - diacylglyceryl transferase, at 3,507,020 to 3,507,832
_RS16200
RR42_RS16205: RR42_RS16205 - LysR family transcriptional regulator, at 3,507,904 to 3,508,926
_RS16205
Position (kb)
3507
3508 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3506.083 kb on + strand at 3506.083 kb on + strand at 3506.083 kb on + strand at 3506.083 kb on + strand at 3506.195 kb on + strand at 3506.292 kb on - strand at 3506.292 kb on - strand at 3506.309 kb on - strand at 3506.548 kb on + strand, within RR42_RS16195 at 3506.549 kb on - strand, within RR42_RS16195 at 3506.873 kb on - strand, within RR42_RS16195 at 3507.846 kb on - strand at 3507.846 kb on - strand at 3507.853 kb on - strand at 3507.857 kb on - strand at 3507.857 kb on - strand at 3507.977 kb on - strand at 3507.977 kb on - strand at 3508.128 kb on - strand, within RR42_RS16205 at 3508.128 kb on - strand, within RR42_RS16205 at 3508.128 kb on - strand, within RR42_RS16205 at 3508.265 kb on + strand, within RR42_RS16205 at 3508.266 kb on - strand, within RR42_RS16205 at 3508.275 kb on + strand, within RR42_RS16205 at 3508.275 kb on + strand, within RR42_RS16205 at 3508.286 kb on + strand, within RR42_RS16205 at 3508.287 kb on - strand, within RR42_RS16205 at 3508.287 kb on - strand, within RR42_RS16205 at 3508.287 kb on - strand, within RR42_RS16205 at 3508.448 kb on + strand, within RR42_RS16205 at 3508.449 kb on - strand, within RR42_RS16205 at 3508.619 kb on + strand, within RR42_RS16205 at 3508.620 kb on - strand, within RR42_RS16205 at 3508.620 kb on - strand, within RR42_RS16205
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol% remove 3,506,083 + +0.0 3,506,083 + -0.1 3,506,083 + +0.8 3,506,083 + +0.2 3,506,195 + +0.2 3,506,292 - -0.6 3,506,292 - -1.8 3,506,309 - +2.2 3,506,548 + RR42_RS16195 0.35 +0.2 3,506,549 - RR42_RS16195 0.35 -0.3 3,506,873 - RR42_RS16195 0.83 +1.1 3,507,846 - +0.0 3,507,846 - +0.0 3,507,853 - +1.8 3,507,857 - -0.6 3,507,857 - -0.3 3,507,977 - -0.6 3,507,977 - +0.6 3,508,128 - RR42_RS16205 0.22 -1.6 3,508,128 - RR42_RS16205 0.22 -0.6 3,508,128 - RR42_RS16205 0.22 +1.0 3,508,265 + RR42_RS16205 0.35 -0.2 3,508,266 - RR42_RS16205 0.35 -0.8 3,508,275 + RR42_RS16205 0.36 +0.8 3,508,275 + RR42_RS16205 0.36 +1.2 3,508,286 + RR42_RS16205 0.37 -0.8 3,508,287 - RR42_RS16205 0.37 +0.1 3,508,287 - RR42_RS16205 0.37 +0.4 3,508,287 - RR42_RS16205 0.37 -0.9 3,508,448 + RR42_RS16205 0.53 +0.5 3,508,449 - RR42_RS16205 0.53 -0.5 3,508,619 + RR42_RS16205 0.70 -0.5 3,508,620 - RR42_RS16205 0.70 -0.5 3,508,620 - RR42_RS16205 0.70 -1.3
Or see this region's nucleotide sequence