Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS10335

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS10330 and RR42_RS10335 overlap by 1 nucleotidesRR42_RS10335 and RR42_RS10340 are separated by 112 nucleotides RR42_RS10330: RR42_RS10330 - hydantoinase, at 2,210,412 to 2,212,199 _RS10330 RR42_RS10335: RR42_RS10335 - hypothetical protein, at 2,212,199 to 2,212,678 _RS10335 RR42_RS10340: RR42_RS10340 - GntR family transcriptional regulator, at 2,212,791 to 2,213,579 _RS10340 Position (kb) 2212 2213Strain fitness (log2 ratio) -1 0 1at 2211.350 kb on + strand, within RR42_RS10330at 2211.680 kb on - strand, within RR42_RS10330at 2212.001 kb on - strand, within RR42_RS10330at 2212.008 kb on + strand, within RR42_RS10330at 2212.067 kb on + strandat 2212.067 kb on + strandat 2212.068 kb on - strandat 2212.068 kb on - strandat 2212.068 kb on - strandat 2212.872 kb on + strand, within RR42_RS10340at 2213.045 kb on - strand, within RR42_RS10340at 2213.045 kb on - strand, within RR42_RS10340at 2213.508 kb on + strandat 2213.509 kb on - strandat 2213.592 kb on - strandat 2213.647 kb on + strandat 2213.648 kb on - strandat 2213.648 kb on - strandat 2213.648 kb on - strandat 2213.648 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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2,211,350 + RR42_RS10330 0.52 -1.5
2,211,680 - RR42_RS10330 0.71 -0.2
2,212,001 - RR42_RS10330 0.89 -0.8
2,212,008 + RR42_RS10330 0.89 +0.0
2,212,067 + -0.8
2,212,067 + -0.2
2,212,068 - -0.1
2,212,068 - +0.1
2,212,068 - -0.3
2,212,872 + RR42_RS10340 0.10 +0.2
2,213,045 - RR42_RS10340 0.32 -0.8
2,213,045 - RR42_RS10340 0.32 +0.2
2,213,508 + +1.4
2,213,509 - -1.0
2,213,592 - -0.1
2,213,647 + +0.2
2,213,648 - -0.4
2,213,648 - -0.7
2,213,648 - -1.1
2,213,648 - -0.4

Or see this region's nucleotide sequence