Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS09520

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS09510 and RR42_RS09515 are separated by 109 nucleotidesRR42_RS09515 and RR42_RS09520 are separated by 56 nucleotidesRR42_RS09520 and RR42_RS09525 overlap by 1 nucleotides RR42_RS09510: RR42_RS09510 - hypothetical protein, at 2,016,463 to 2,017,416 _RS09510 RR42_RS09515: RR42_RS09515 - hypothetical protein, at 2,017,526 to 2,017,819 _RS09515 RR42_RS09520: RR42_RS09520 - transcriptional regulator, at 2,017,876 to 2,018,589 _RS09520 RR42_RS09525: RR42_RS09525 - histidine kinase, at 2,018,589 to 2,019,935 _RS09525 Position (kb) 2017 2018 2019Strain fitness (log2 ratio) -1 0 1at 2017.171 kb on + strand, within RR42_RS09510at 2017.172 kb on - strand, within RR42_RS09510at 2017.172 kb on - strand, within RR42_RS09510at 2017.195 kb on + strand, within RR42_RS09510at 2017.195 kb on + strand, within RR42_RS09510at 2017.196 kb on - strand, within RR42_RS09510at 2017.216 kb on + strand, within RR42_RS09510at 2017.312 kb on + strand, within RR42_RS09510at 2017.312 kb on + strand, within RR42_RS09510at 2017.313 kb on - strand, within RR42_RS09510at 2017.313 kb on - strand, within RR42_RS09510at 2017.334 kb on - strandat 2017.508 kb on + strandat 2017.558 kb on + strand, within RR42_RS09515at 2017.559 kb on - strand, within RR42_RS09515at 2017.897 kb on - strandat 2018.179 kb on + strand, within RR42_RS09520at 2018.180 kb on - strand, within RR42_RS09520at 2018.180 kb on - strand, within RR42_RS09520at 2018.180 kb on - strand, within RR42_RS09520at 2018.480 kb on + strand, within RR42_RS09520at 2018.480 kb on + strand, within RR42_RS09520at 2018.481 kb on - strand, within RR42_RS09520at 2018.481 kb on - strand, within RR42_RS09520at 2018.481 kb on - strand, within RR42_RS09520at 2018.481 kb on - strand, within RR42_RS09520at 2018.561 kb on - strandat 2018.729 kb on - strand, within RR42_RS09525at 2018.729 kb on - strand, within RR42_RS09525at 2018.919 kb on + strand, within RR42_RS09525at 2019.420 kb on + strand, within RR42_RS09525

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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2,017,171 + RR42_RS09510 0.74 -0.9
2,017,172 - RR42_RS09510 0.74 -1.7
2,017,172 - RR42_RS09510 0.74 -0.0
2,017,195 + RR42_RS09510 0.77 -0.2
2,017,195 + RR42_RS09510 0.77 +0.2
2,017,196 - RR42_RS09510 0.77 +1.2
2,017,216 + RR42_RS09510 0.79 +0.4
2,017,312 + RR42_RS09510 0.89 +0.4
2,017,312 + RR42_RS09510 0.89 -1.2
2,017,313 - RR42_RS09510 0.89 +0.8
2,017,313 - RR42_RS09510 0.89 +0.1
2,017,334 - -0.0
2,017,508 + +0.0
2,017,558 + RR42_RS09515 0.11 +1.0
2,017,559 - RR42_RS09515 0.11 -0.2
2,017,897 - +1.2
2,018,179 + RR42_RS09520 0.42 -0.1
2,018,180 - RR42_RS09520 0.43 -0.3
2,018,180 - RR42_RS09520 0.43 +0.8
2,018,180 - RR42_RS09520 0.43 +0.2
2,018,480 + RR42_RS09520 0.85 +1.1
2,018,480 + RR42_RS09520 0.85 +0.6
2,018,481 - RR42_RS09520 0.85 +0.5
2,018,481 - RR42_RS09520 0.85 +0.4
2,018,481 - RR42_RS09520 0.85 +0.3
2,018,481 - RR42_RS09520 0.85 -0.4
2,018,561 - -0.8
2,018,729 - RR42_RS09525 0.10 +0.3
2,018,729 - RR42_RS09525 0.10 -0.1
2,018,919 + RR42_RS09525 0.24 -0.4
2,019,420 + RR42_RS09525 0.62 -1.2

Or see this region's nucleotide sequence