Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS08560

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS08545 and RR42_RS08550 are separated by 94 nucleotidesRR42_RS08550 and RR42_RS08555 are separated by 42 nucleotidesRR42_RS08555 and RR42_RS08560 are separated by 22 nucleotidesRR42_RS08560 and RR42_RS08565 are separated by 232 nucleotidesRR42_RS08565 and RR42_RS08570 are separated by 12 nucleotides RR42_RS08545: RR42_RS08545 - hypothetical protein, at 1,795,647 to 1,798,328 _RS08545 RR42_RS08550: RR42_RS08550 - tail fiber protein, at 1,798,423 to 1,798,752 _RS08550 RR42_RS08555: RR42_RS08555 - major tail tube protein, at 1,798,795 to 1,799,304 _RS08555 RR42_RS08560: RR42_RS08560 - tail sheath protein, at 1,799,327 to 1,800,499 _RS08560 RR42_RS08565: RR42_RS08565 - hypothetical protein, at 1,800,732 to 1,801,331 _RS08565 RR42_RS08570: RR42_RS08570 - hypothetical protein, at 1,801,344 to 1,802,915 _RS08570 Position (kb) 1799 1800 1801Strain fitness (log2 ratio) -1 0 1at 1798.464 kb on - strand, within RR42_RS08550at 1798.777 kb on + strandat 1798.777 kb on + strandat 1798.797 kb on - strandat 1798.866 kb on - strand, within RR42_RS08555at 1798.910 kb on + strand, within RR42_RS08555at 1799.039 kb on + strand, within RR42_RS08555at 1799.040 kb on - strand, within RR42_RS08555at 1799.088 kb on - strand, within RR42_RS08555at 1799.192 kb on + strand, within RR42_RS08555at 1799.250 kb on - strand, within RR42_RS08555at 1799.361 kb on + strandat 1799.419 kb on - strandat 1799.506 kb on - strand, within RR42_RS08560at 1799.525 kb on - strand, within RR42_RS08560at 1799.646 kb on + strand, within RR42_RS08560at 1799.784 kb on + strand, within RR42_RS08560at 1800.033 kb on + strand, within RR42_RS08560at 1800.033 kb on + strand, within RR42_RS08560at 1800.034 kb on - strand, within RR42_RS08560at 1800.034 kb on - strand, within RR42_RS08560at 1800.034 kb on - strand, within RR42_RS08560at 1800.637 kb on - strandat 1800.637 kb on - strandat 1801.129 kb on + strand, within RR42_RS08565at 1801.294 kb on + strandat 1801.295 kb on - strandat 1801.295 kb on - strandat 1801.346 kb on - strandat 1801.348 kb on + strandat 1801.349 kb on - strandat 1801.349 kb on - strandat 1801.483 kb on + strandat 1801.483 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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1,798,464 - RR42_RS08550 0.12 -0.5
1,798,777 + -0.2
1,798,777 + +0.1
1,798,797 - -0.3
1,798,866 - RR42_RS08555 0.14 -0.1
1,798,910 + RR42_RS08555 0.23 +0.8
1,799,039 + RR42_RS08555 0.48 +0.2
1,799,040 - RR42_RS08555 0.48 -1.1
1,799,088 - RR42_RS08555 0.57 -1.2
1,799,192 + RR42_RS08555 0.78 +0.3
1,799,250 - RR42_RS08555 0.89 -0.3
1,799,361 + +0.1
1,799,419 - +0.2
1,799,506 - RR42_RS08560 0.15 -0.6
1,799,525 - RR42_RS08560 0.17 -0.7
1,799,646 + RR42_RS08560 0.27 -0.1
1,799,784 + RR42_RS08560 0.39 -0.3
1,800,033 + RR42_RS08560 0.60 -1.1
1,800,033 + RR42_RS08560 0.60 -0.2
1,800,034 - RR42_RS08560 0.60 +0.0
1,800,034 - RR42_RS08560 0.60 -0.5
1,800,034 - RR42_RS08560 0.60 +0.1
1,800,637 - +0.1
1,800,637 - -0.5
1,801,129 + RR42_RS08565 0.66 -1.5
1,801,294 + -0.0
1,801,295 - +1.6
1,801,295 - -0.6
1,801,346 - -0.4
1,801,348 + +0.6
1,801,349 - +0.5
1,801,349 - +0.5
1,801,483 + -0.5
1,801,483 + +0.1

Or see this region's nucleotide sequence