Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS07960

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS07955 and RR42_RS07960 are separated by 38 nucleotidesRR42_RS07960 and RR42_RS07965 are separated by 540 nucleotides RR42_RS07955: RR42_RS07955 - allantoate amidohydrolase, at 1,709,977 to 1,711,224 _RS07955 RR42_RS07960: RR42_RS07960 - IclR family transcriptional regulator, at 1,711,263 to 1,711,982 _RS07960 RR42_RS07965: RR42_RS07965 - GntR family transcriptional regulator, at 1,712,523 to 1,713,221 _RS07965 Position (kb) 1711 1712Strain fitness (log2 ratio) -2 -1 0 1at 1710.551 kb on - strand, within RR42_RS07955at 1710.551 kb on - strand, within RR42_RS07955at 1710.640 kb on + strand, within RR42_RS07955at 1710.790 kb on + strand, within RR42_RS07955at 1710.791 kb on - strand, within RR42_RS07955at 1711.079 kb on - strand, within RR42_RS07955at 1711.171 kb on - strandat 1711.424 kb on + strand, within RR42_RS07960at 1711.615 kb on + strand, within RR42_RS07960at 1711.615 kb on + strand, within RR42_RS07960at 1711.616 kb on - strand, within RR42_RS07960at 1711.616 kb on - strand, within RR42_RS07960at 1711.657 kb on + strand, within RR42_RS07960at 1711.658 kb on - strand, within RR42_RS07960at 1711.658 kb on - strand, within RR42_RS07960at 1711.684 kb on + strand, within RR42_RS07960at 1711.685 kb on - strand, within RR42_RS07960at 1711.756 kb on + strand, within RR42_RS07960at 1711.757 kb on - strand, within RR42_RS07960at 1711.795 kb on + strand, within RR42_RS07960at 1711.795 kb on + strand, within RR42_RS07960at 1711.796 kb on - strand, within RR42_RS07960at 1711.796 kb on - strand, within RR42_RS07960at 1711.796 kb on - strand, within RR42_RS07960at 1711.796 kb on - strand, within RR42_RS07960at 1711.796 kb on - strand, within RR42_RS07960at 1711.796 kb on - strand, within RR42_RS07960at 1711.883 kb on + strand, within RR42_RS07960at 1711.884 kb on - strand, within RR42_RS07960at 1712.196 kb on - strandat 1712.254 kb on - strandat 1712.290 kb on - strandat 1712.324 kb on + strandat 1712.616 kb on + strand, within RR42_RS07965at 1712.617 kb on - strand, within RR42_RS07965at 1712.617 kb on - strand, within RR42_RS07965

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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1,710,551 - RR42_RS07955 0.46 +0.5
1,710,551 - RR42_RS07955 0.46 +0.2
1,710,640 + RR42_RS07955 0.53 -0.1
1,710,790 + RR42_RS07955 0.65 -0.5
1,710,791 - RR42_RS07955 0.65 -0.1
1,711,079 - RR42_RS07955 0.88 +0.7
1,711,171 - +0.5
1,711,424 + RR42_RS07960 0.22 -1.3
1,711,615 + RR42_RS07960 0.49 +0.3
1,711,615 + RR42_RS07960 0.49 -0.1
1,711,616 - RR42_RS07960 0.49 +0.2
1,711,616 - RR42_RS07960 0.49 -0.2
1,711,657 + RR42_RS07960 0.55 -0.6
1,711,658 - RR42_RS07960 0.55 -0.1
1,711,658 - RR42_RS07960 0.55 -1.0
1,711,684 + RR42_RS07960 0.58 -0.7
1,711,685 - RR42_RS07960 0.59 +0.1
1,711,756 + RR42_RS07960 0.68 -0.3
1,711,757 - RR42_RS07960 0.69 +0.1
1,711,795 + RR42_RS07960 0.74 +1.1
1,711,795 + RR42_RS07960 0.74 -2.3
1,711,796 - RR42_RS07960 0.74 -1.0
1,711,796 - RR42_RS07960 0.74 -0.4
1,711,796 - RR42_RS07960 0.74 +0.6
1,711,796 - RR42_RS07960 0.74 -0.1
1,711,796 - RR42_RS07960 0.74 +0.2
1,711,796 - RR42_RS07960 0.74 -0.4
1,711,883 + RR42_RS07960 0.86 -0.8
1,711,884 - RR42_RS07960 0.86 -0.6
1,712,196 - +0.3
1,712,254 - +0.0
1,712,290 - +0.7
1,712,324 + +0.4
1,712,616 + RR42_RS07965 0.13 +1.2
1,712,617 - RR42_RS07965 0.13 -0.2
1,712,617 - RR42_RS07965 0.13 -0.1

Or see this region's nucleotide sequence