Experiment: R2A with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS07955 and RR42_RS07960 are separated by 38 nucleotides RR42_RS07960 and RR42_RS07965 are separated by 540 nucleotides
RR42_RS07955: RR42_RS07955 - allantoate amidohydrolase, at 1,709,977 to 1,711,224
_RS07955
RR42_RS07960: RR42_RS07960 - IclR family transcriptional regulator, at 1,711,263 to 1,711,982
_RS07960
RR42_RS07965: RR42_RS07965 - GntR family transcriptional regulator, at 1,712,523 to 1,713,221
_RS07965
Position (kb)
1711
1712 Strain fitness (log2 ratio)
-2
-1
0
1 at 1710.551 kb on - strand, within RR42_RS07955 at 1710.551 kb on - strand, within RR42_RS07955 at 1710.640 kb on + strand, within RR42_RS07955 at 1710.790 kb on + strand, within RR42_RS07955 at 1710.791 kb on - strand, within RR42_RS07955 at 1711.079 kb on - strand, within RR42_RS07955 at 1711.171 kb on - strand at 1711.424 kb on + strand, within RR42_RS07960 at 1711.615 kb on + strand, within RR42_RS07960 at 1711.615 kb on + strand, within RR42_RS07960 at 1711.616 kb on - strand, within RR42_RS07960 at 1711.616 kb on - strand, within RR42_RS07960 at 1711.657 kb on + strand, within RR42_RS07960 at 1711.658 kb on - strand, within RR42_RS07960 at 1711.658 kb on - strand, within RR42_RS07960 at 1711.684 kb on + strand, within RR42_RS07960 at 1711.685 kb on - strand, within RR42_RS07960 at 1711.756 kb on + strand, within RR42_RS07960 at 1711.757 kb on - strand, within RR42_RS07960 at 1711.795 kb on + strand, within RR42_RS07960 at 1711.795 kb on + strand, within RR42_RS07960 at 1711.796 kb on - strand, within RR42_RS07960 at 1711.796 kb on - strand, within RR42_RS07960 at 1711.796 kb on - strand, within RR42_RS07960 at 1711.796 kb on - strand, within RR42_RS07960 at 1711.796 kb on - strand, within RR42_RS07960 at 1711.796 kb on - strand, within RR42_RS07960 at 1711.883 kb on + strand, within RR42_RS07960 at 1711.884 kb on - strand, within RR42_RS07960 at 1712.196 kb on - strand at 1712.254 kb on - strand at 1712.290 kb on - strand at 1712.324 kb on + strand at 1712.616 kb on + strand, within RR42_RS07965 at 1712.617 kb on - strand, within RR42_RS07965 at 1712.617 kb on - strand, within RR42_RS07965
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol% remove 1,710,551 - RR42_RS07955 0.46 +0.5 1,710,551 - RR42_RS07955 0.46 +0.2 1,710,640 + RR42_RS07955 0.53 -0.1 1,710,790 + RR42_RS07955 0.65 -0.5 1,710,791 - RR42_RS07955 0.65 -0.1 1,711,079 - RR42_RS07955 0.88 +0.7 1,711,171 - +0.5 1,711,424 + RR42_RS07960 0.22 -1.3 1,711,615 + RR42_RS07960 0.49 +0.3 1,711,615 + RR42_RS07960 0.49 -0.1 1,711,616 - RR42_RS07960 0.49 +0.2 1,711,616 - RR42_RS07960 0.49 -0.2 1,711,657 + RR42_RS07960 0.55 -0.6 1,711,658 - RR42_RS07960 0.55 -0.1 1,711,658 - RR42_RS07960 0.55 -1.0 1,711,684 + RR42_RS07960 0.58 -0.7 1,711,685 - RR42_RS07960 0.59 +0.1 1,711,756 + RR42_RS07960 0.68 -0.3 1,711,757 - RR42_RS07960 0.69 +0.1 1,711,795 + RR42_RS07960 0.74 +1.1 1,711,795 + RR42_RS07960 0.74 -2.3 1,711,796 - RR42_RS07960 0.74 -1.0 1,711,796 - RR42_RS07960 0.74 -0.4 1,711,796 - RR42_RS07960 0.74 +0.6 1,711,796 - RR42_RS07960 0.74 -0.1 1,711,796 - RR42_RS07960 0.74 +0.2 1,711,796 - RR42_RS07960 0.74 -0.4 1,711,883 + RR42_RS07960 0.86 -0.8 1,711,884 - RR42_RS07960 0.86 -0.6 1,712,196 - +0.3 1,712,254 - +0.0 1,712,290 - +0.7 1,712,324 + +0.4 1,712,616 + RR42_RS07965 0.13 +1.2 1,712,617 - RR42_RS07965 0.13 -0.2 1,712,617 - RR42_RS07965 0.13 -0.1
Or see this region's nucleotide sequence