Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS06705

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS06705 and RR42_RS06710 overlap by 4 nucleotidesRR42_RS06710 and RR42_RS06715 overlap by 4 nucleotides RR42_RS06705: RR42_RS06705 - hypothetical protein, at 1,458,600 to 1,458,821 _RS06705 RR42_RS06710: RR42_RS06710 - hypothetical protein, at 1,458,818 to 1,459,051 _RS06710 RR42_RS06715: RR42_RS06715 - hypothetical protein, at 1,459,048 to 1,460,220 _RS06715 Position (kb) 1458 1459Strain fitness (log2 ratio) -1 0 1at 1457.605 kb on + strandat 1457.705 kb on + strandat 1457.828 kb on + strandat 1457.828 kb on + strandat 1457.924 kb on - strandat 1458.078 kb on + strandat 1458.079 kb on - strandat 1458.110 kb on - strandat 1458.481 kb on + strandat 1458.481 kb on + strandat 1458.482 kb on - strandat 1458.482 kb on - strandat 1458.586 kb on + strandat 1458.587 kb on - strandat 1458.601 kb on + strandat 1458.606 kb on + strandat 1458.606 kb on + strandat 1458.606 kb on + strandat 1458.606 kb on + strandat 1458.606 kb on + strandat 1458.607 kb on - strandat 1458.607 kb on - strandat 1458.752 kb on + strand, within RR42_RS06705at 1458.821 kb on + strandat 1458.822 kb on - strandat 1458.828 kb on + strandat 1458.828 kb on + strandat 1458.829 kb on - strandat 1458.829 kb on - strandat 1458.829 kb on - strandat 1458.829 kb on - strandat 1458.829 kb on - strandat 1458.829 kb on - strandat 1458.832 kb on + strandat 1458.955 kb on - strand, within RR42_RS06710at 1459.179 kb on - strand, within RR42_RS06715at 1459.188 kb on + strand, within RR42_RS06715at 1459.189 kb on - strand, within RR42_RS06715at 1459.270 kb on - strand, within RR42_RS06715at 1459.459 kb on - strand, within RR42_RS06715at 1459.533 kb on - strand, within RR42_RS06715at 1459.533 kb on - strand, within RR42_RS06715at 1459.533 kb on - strand, within RR42_RS06715at 1459.632 kb on + strand, within RR42_RS06715at 1459.632 kb on + strand, within RR42_RS06715at 1459.655 kb on - strand, within RR42_RS06715at 1459.655 kb on - strand, within RR42_RS06715at 1459.655 kb on - strand, within RR42_RS06715

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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1,457,605 + -0.1
1,457,705 + +0.9
1,457,828 + +0.8
1,457,828 + -0.3
1,457,924 - +0.7
1,458,078 + +1.0
1,458,079 - +0.4
1,458,110 - +0.5
1,458,481 + +0.3
1,458,481 + -0.5
1,458,482 - +1.0
1,458,482 - -0.7
1,458,586 + +0.5
1,458,587 - +0.5
1,458,601 + -0.7
1,458,606 + +0.5
1,458,606 + +0.2
1,458,606 + -0.2
1,458,606 + +0.2
1,458,606 + +0.7
1,458,607 - +1.2
1,458,607 - +0.2
1,458,752 + RR42_RS06705 0.68 +0.6
1,458,821 + -0.6
1,458,822 - +0.3
1,458,828 + -0.2
1,458,828 + +0.8
1,458,829 - +0.2
1,458,829 - -0.4
1,458,829 - -0.0
1,458,829 - -1.0
1,458,829 - -0.1
1,458,829 - +0.2
1,458,832 + +0.2
1,458,955 - RR42_RS06710 0.59 -0.4
1,459,179 - RR42_RS06715 0.11 +0.7
1,459,188 + RR42_RS06715 0.12 +0.4
1,459,189 - RR42_RS06715 0.12 +0.6
1,459,270 - RR42_RS06715 0.19 +0.1
1,459,459 - RR42_RS06715 0.35 +0.8
1,459,533 - RR42_RS06715 0.41 -1.4
1,459,533 - RR42_RS06715 0.41 +0.7
1,459,533 - RR42_RS06715 0.41 -0.7
1,459,632 + RR42_RS06715 0.50 +0.4
1,459,632 + RR42_RS06715 0.50 -0.6
1,459,655 - RR42_RS06715 0.52 +0.5
1,459,655 - RR42_RS06715 0.52 -0.0
1,459,655 - RR42_RS06715 0.52 +0.7

Or see this region's nucleotide sequence