Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS05035

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS05030 and RR42_RS05035 are separated by 296 nucleotidesRR42_RS05035 and RR42_RS05040 are separated by 447 nucleotides RR42_RS05030: RR42_RS05030 - hypothetical protein, at 1,110,372 to 1,112,039 _RS05030 RR42_RS05035: RR42_RS05035 - LuxR family transcriptional regulator, at 1,112,336 to 1,112,839 _RS05035 RR42_RS05040: RR42_RS05040 - gamma-glutamyltransferase, at 1,113,287 to 1,115,266 _RS05040 Position (kb) 1112 1113Strain fitness (log2 ratio) -2 -1 0 1at 1111.669 kb on + strand, within RR42_RS05030at 1111.669 kb on + strand, within RR42_RS05030at 1111.670 kb on - strand, within RR42_RS05030at 1111.670 kb on - strand, within RR42_RS05030at 1111.673 kb on + strand, within RR42_RS05030at 1111.979 kb on + strandat 1111.979 kb on + strandat 1111.980 kb on - strandat 1112.710 kb on + strand, within RR42_RS05035at 1112.710 kb on + strand, within RR42_RS05035at 1112.710 kb on + strand, within RR42_RS05035at 1112.710 kb on + strand, within RR42_RS05035at 1112.710 kb on + strand, within RR42_RS05035at 1112.710 kb on + strand, within RR42_RS05035at 1112.710 kb on + strand, within RR42_RS05035at 1112.710 kb on + strand, within RR42_RS05035at 1112.711 kb on - strand, within RR42_RS05035at 1112.711 kb on - strand, within RR42_RS05035at 1112.711 kb on - strand, within RR42_RS05035at 1112.711 kb on - strand, within RR42_RS05035at 1112.711 kb on - strand, within RR42_RS05035at 1112.882 kb on - strandat 1112.882 kb on - strandat 1113.009 kb on + strandat 1113.010 kb on - strandat 1113.037 kb on + strandat 1113.037 kb on + strandat 1113.038 kb on - strandat 1113.060 kb on + strandat 1113.075 kb on - strandat 1113.103 kb on + strandat 1113.103 kb on + strandat 1113.191 kb on + strandat 1113.191 kb on + strandat 1113.191 kb on + strandat 1113.191 kb on + strandat 1113.191 kb on + strandat 1113.192 kb on - strandat 1113.192 kb on - strandat 1113.192 kb on - strandat 1113.231 kb on + strandat 1113.242 kb on - strandat 1113.439 kb on + strandat 1113.479 kb on - strandat 1113.486 kb on - strand, within RR42_RS05040at 1113.497 kb on + strand, within RR42_RS05040at 1113.497 kb on + strand, within RR42_RS05040at 1113.497 kb on + strand, within RR42_RS05040at 1113.497 kb on + strand, within RR42_RS05040at 1113.497 kb on + strand, within RR42_RS05040at 1113.497 kb on + strand, within RR42_RS05040at 1113.497 kb on + strand, within RR42_RS05040at 1113.497 kb on + strand, within RR42_RS05040at 1113.498 kb on - strand, within RR42_RS05040at 1113.498 kb on - strand, within RR42_RS05040at 1113.498 kb on - strand, within RR42_RS05040at 1113.498 kb on - strand, within RR42_RS05040at 1113.498 kb on - strand, within RR42_RS05040at 1113.498 kb on - strand, within RR42_RS05040at 1113.498 kb on - strand, within RR42_RS05040at 1113.498 kb on - strand, within RR42_RS05040at 1113.498 kb on - strand, within RR42_RS05040at 1113.498 kb on - strand, within RR42_RS05040at 1113.498 kb on - strand, within RR42_RS05040at 1113.499 kb on + strand, within RR42_RS05040at 1113.499 kb on + strand, within RR42_RS05040at 1113.499 kb on + strand, within RR42_RS05040at 1113.500 kb on - strand, within RR42_RS05040at 1113.653 kb on + strand, within RR42_RS05040at 1113.653 kb on + strand, within RR42_RS05040at 1113.654 kb on - strand, within RR42_RS05040at 1113.654 kb on - strand, within RR42_RS05040at 1113.656 kb on + strand, within RR42_RS05040at 1113.657 kb on - strand, within RR42_RS05040at 1113.657 kb on - strand, within RR42_RS05040at 1113.657 kb on - strand, within RR42_RS05040at 1113.728 kb on + strand, within RR42_RS05040at 1113.728 kb on + strand, within RR42_RS05040at 1113.728 kb on + strand, within RR42_RS05040at 1113.729 kb on - strand, within RR42_RS05040at 1113.729 kb on - strand, within RR42_RS05040at 1113.729 kb on - strand, within RR42_RS05040at 1113.730 kb on + strand, within RR42_RS05040at 1113.731 kb on - strand, within RR42_RS05040at 1113.772 kb on + strand, within RR42_RS05040at 1113.773 kb on - strand, within RR42_RS05040

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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1,111,669 + RR42_RS05030 0.78 -2.4
1,111,669 + RR42_RS05030 0.78 -0.9
1,111,670 - RR42_RS05030 0.78 +0.6
1,111,670 - RR42_RS05030 0.78 +0.6
1,111,673 + RR42_RS05030 0.78 -0.9
1,111,979 + -2.0
1,111,979 + +0.7
1,111,980 - -0.3
1,112,710 + RR42_RS05035 0.74 +0.5
1,112,710 + RR42_RS05035 0.74 -0.1
1,112,710 + RR42_RS05035 0.74 +0.4
1,112,710 + RR42_RS05035 0.74 -0.3
1,112,710 + RR42_RS05035 0.74 -0.1
1,112,710 + RR42_RS05035 0.74 +0.3
1,112,710 + RR42_RS05035 0.74 +1.4
1,112,710 + RR42_RS05035 0.74 -0.2
1,112,711 - RR42_RS05035 0.74 +0.6
1,112,711 - RR42_RS05035 0.74 +0.6
1,112,711 - RR42_RS05035 0.74 -0.7
1,112,711 - RR42_RS05035 0.74 -0.5
1,112,711 - RR42_RS05035 0.74 +1.0
1,112,882 - -0.1
1,112,882 - -0.2
1,113,009 + +1.2
1,113,010 - -1.6
1,113,037 + -0.2
1,113,037 + -0.1
1,113,038 - +0.2
1,113,060 + -0.5
1,113,075 - +0.3
1,113,103 + +1.2
1,113,103 + +0.2
1,113,191 + -1.6
1,113,191 + -0.5
1,113,191 + -2.7
1,113,191 + -0.2
1,113,191 + -0.4
1,113,192 - -0.9
1,113,192 - -0.8
1,113,192 - -0.8
1,113,231 + +0.2
1,113,242 - +0.7
1,113,439 + -0.0
1,113,479 - -0.1
1,113,486 - RR42_RS05040 0.10 +0.1
1,113,497 + RR42_RS05040 0.11 +0.6
1,113,497 + RR42_RS05040 0.11 +0.2
1,113,497 + RR42_RS05040 0.11 +0.1
1,113,497 + RR42_RS05040 0.11 -1.6
1,113,497 + RR42_RS05040 0.11 -0.6
1,113,497 + RR42_RS05040 0.11 -0.1
1,113,497 + RR42_RS05040 0.11 +0.0
1,113,497 + RR42_RS05040 0.11 +0.4
1,113,498 - RR42_RS05040 0.11 -0.8
1,113,498 - RR42_RS05040 0.11 +0.0
1,113,498 - RR42_RS05040 0.11 -1.5
1,113,498 - RR42_RS05040 0.11 +1.0
1,113,498 - RR42_RS05040 0.11 -0.3
1,113,498 - RR42_RS05040 0.11 +0.2
1,113,498 - RR42_RS05040 0.11 -0.1
1,113,498 - RR42_RS05040 0.11 -1.0
1,113,498 - RR42_RS05040 0.11 -0.5
1,113,498 - RR42_RS05040 0.11 -0.6
1,113,498 - RR42_RS05040 0.11 +0.4
1,113,499 + RR42_RS05040 0.11 -0.1
1,113,499 + RR42_RS05040 0.11 +0.7
1,113,499 + RR42_RS05040 0.11 +0.9
1,113,500 - RR42_RS05040 0.11 +0.0
1,113,653 + RR42_RS05040 0.18 +0.2
1,113,653 + RR42_RS05040 0.18 +0.3
1,113,654 - RR42_RS05040 0.19 -0.4
1,113,654 - RR42_RS05040 0.19 -0.8
1,113,656 + RR42_RS05040 0.19 -0.3
1,113,657 - RR42_RS05040 0.19 +0.1
1,113,657 - RR42_RS05040 0.19 +0.2
1,113,657 - RR42_RS05040 0.19 +0.0
1,113,728 + RR42_RS05040 0.22 +0.4
1,113,728 + RR42_RS05040 0.22 -0.1
1,113,728 + RR42_RS05040 0.22 +0.1
1,113,729 - RR42_RS05040 0.22 +1.5
1,113,729 - RR42_RS05040 0.22 +0.8
1,113,729 - RR42_RS05040 0.22 -0.0
1,113,730 + RR42_RS05040 0.22 -0.6
1,113,731 - RR42_RS05040 0.22 -1.4
1,113,772 + RR42_RS05040 0.24 +0.5
1,113,773 - RR42_RS05040 0.25 -0.5

Or see this region's nucleotide sequence