Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04365

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS04360 and RR42_RS04365 are separated by 78 nucleotidesRR42_RS04365 and RR42_RS04370 are separated by 247 nucleotides RR42_RS04360: RR42_RS04360 - seryl-tRNA synthetase, at 969,558 to 970,871 _RS04360 RR42_RS04365: RR42_RS04365 - tRNA-Ser, at 970,950 to 971,039 _RS04365 RR42_RS04370: RR42_RS04370 - hypothetical protein, at 971,287 to 972,186 _RS04370 Position (kb) 970 971 972Strain fitness (log2 ratio) -1 0 1 2at 971.284 kb on - strandat 971.284 kb on - strandat 971.380 kb on + strand, within RR42_RS04370at 971.380 kb on + strand, within RR42_RS04370at 971.407 kb on + strand, within RR42_RS04370at 971.408 kb on - strand, within RR42_RS04370at 971.422 kb on + strand, within RR42_RS04370at 971.476 kb on + strand, within RR42_RS04370at 971.476 kb on + strandat 971.476 kb on + strand, within RR42_RS04370at 971.476 kb on + strand, within RR42_RS04370at 971.476 kb on + strand, within RR42_RS04370at 971.476 kb on + strand, within RR42_RS04370at 971.477 kb on - strand, within RR42_RS04370at 971.477 kb on - strand, within RR42_RS04370at 971.477 kb on - strand, within RR42_RS04370at 971.477 kb on - strand, within RR42_RS04370at 971.647 kb on + strand, within RR42_RS04370at 971.647 kb on + strand, within RR42_RS04370at 971.668 kb on + strand, within RR42_RS04370at 971.669 kb on - strand, within RR42_RS04370at 971.773 kb on + strand, within RR42_RS04370at 971.774 kb on - strand, within RR42_RS04370at 971.774 kb on - strand, within RR42_RS04370at 971.774 kb on - strand, within RR42_RS04370at 971.884 kb on - strand, within RR42_RS04370at 971.884 kb on - strand, within RR42_RS04370

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
remove
971,284 - +1.9
971,284 - -1.2
971,380 + RR42_RS04370 0.10 +0.3
971,380 + RR42_RS04370 0.10 +0.6
971,407 + RR42_RS04370 0.13 +0.7
971,408 - RR42_RS04370 0.13 -0.2
971,422 + RR42_RS04370 0.15 +0.3
971,476 + RR42_RS04370 0.21 -1.3
971,476 + +2.2
971,476 + RR42_RS04370 0.21 -1.3
971,476 + RR42_RS04370 0.21 -0.4
971,476 + RR42_RS04370 0.21 +2.0
971,476 + RR42_RS04370 0.21 +0.4
971,477 - RR42_RS04370 0.21 -0.3
971,477 - RR42_RS04370 0.21 -0.3
971,477 - RR42_RS04370 0.21 -0.8
971,477 - RR42_RS04370 0.21 +0.2
971,647 + RR42_RS04370 0.40 -1.6
971,647 + RR42_RS04370 0.40 +0.4
971,668 + RR42_RS04370 0.42 +0.1
971,669 - RR42_RS04370 0.42 +0.8
971,773 + RR42_RS04370 0.54 +0.6
971,774 - RR42_RS04370 0.54 -0.5
971,774 - RR42_RS04370 0.54 -0.1
971,774 - RR42_RS04370 0.54 -1.0
971,884 - RR42_RS04370 0.66 -0.5
971,884 - RR42_RS04370 0.66 -0.2

Or see this region's nucleotide sequence