Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS04220

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS04210 and RR42_RS04215 overlap by 11 nucleotidesRR42_RS04215 and RR42_RS04220 are separated by 6 nucleotidesRR42_RS04220 and RR42_RS04225 are separated by 15 nucleotides RR42_RS04210: RR42_RS04210 - membrane protein, at 932,017 to 933,306 _RS04210 RR42_RS04215: RR42_RS04215 - hypothetical protein, at 933,296 to 933,799 _RS04215 RR42_RS04220: RR42_RS04220 - membrane protein, at 933,806 to 934,666 _RS04220 RR42_RS04225: RR42_RS04225 - hypothetical protein, at 934,682 to 935,302 _RS04225 Position (kb) 933 934 935Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 932.809 kb on + strand, within RR42_RS04210at 932.809 kb on + strand, within RR42_RS04210at 932.923 kb on + strand, within RR42_RS04210at 932.923 kb on + strand, within RR42_RS04210at 932.923 kb on + strand, within RR42_RS04210at 932.923 kb on + strand, within RR42_RS04210at 932.924 kb on - strand, within RR42_RS04210at 932.924 kb on - strand, within RR42_RS04210at 932.924 kb on - strand, within RR42_RS04210at 932.924 kb on - strand, within RR42_RS04210at 933.019 kb on + strand, within RR42_RS04210at 933.020 kb on - strand, within RR42_RS04210at 933.265 kb on + strandat 933.265 kb on + strandat 933.266 kb on - strandat 933.266 kb on - strandat 933.266 kb on - strandat 933.413 kb on + strand, within RR42_RS04215at 933.445 kb on + strand, within RR42_RS04215at 933.446 kb on - strand, within RR42_RS04215at 933.446 kb on - strand, within RR42_RS04215at 933.532 kb on + strand, within RR42_RS04215at 933.532 kb on + strand, within RR42_RS04215at 933.532 kb on + strand, within RR42_RS04215at 933.532 kb on + strand, within RR42_RS04215at 933.533 kb on - strand, within RR42_RS04215at 933.533 kb on - strand, within RR42_RS04215at 933.533 kb on - strand, within RR42_RS04215at 933.533 kb on - strand, within RR42_RS04215at 933.533 kb on - strand, within RR42_RS04215at 933.534 kb on + strand, within RR42_RS04215at 933.534 kb on + strand, within RR42_RS04215at 933.534 kb on + strand, within RR42_RS04215at 933.534 kb on + strand, within RR42_RS04215at 933.535 kb on - strand, within RR42_RS04215at 933.535 kb on - strand, within RR42_RS04215at 933.535 kb on - strand, within RR42_RS04215at 933.535 kb on - strand, within RR42_RS04215at 933.535 kb on - strand, within RR42_RS04215at 934.185 kb on + strand, within RR42_RS04220at 934.186 kb on - strand, within RR42_RS04220at 934.392 kb on + strand, within RR42_RS04220at 934.392 kb on + strand, within RR42_RS04220at 934.424 kb on + strand, within RR42_RS04220at 934.464 kb on + strand, within RR42_RS04220at 934.610 kb on + strandat 934.666 kb on + strandat 934.667 kb on - strandat 934.667 kb on - strandat 934.667 kb on - strandat 934.667 kb on - strandat 934.670 kb on + strandat 934.670 kb on + strandat 934.670 kb on + strandat 934.670 kb on + strandat 934.671 kb on - strandat 934.671 kb on - strandat 934.671 kb on - strandat 934.671 kb on - strandat 934.671 kb on - strandat 934.671 kb on - strandat 934.806 kb on + strand, within RR42_RS04225at 934.807 kb on - strand, within RR42_RS04225at 934.807 kb on - strand, within RR42_RS04225at 934.826 kb on - strand, within RR42_RS04225at 934.827 kb on + strand, within RR42_RS04225at 934.827 kb on + strand, within RR42_RS04225at 934.828 kb on - strand, within RR42_RS04225at 934.828 kb on - strand, within RR42_RS04225at 934.828 kb on - strand, within RR42_RS04225at 934.828 kb on - strand, within RR42_RS04225at 935.091 kb on + strand, within RR42_RS04225at 935.092 kb on - strand, within RR42_RS04225at 935.092 kb on - strand, within RR42_RS04225at 935.105 kb on - strand, within RR42_RS04225at 935.143 kb on - strand, within RR42_RS04225at 935.205 kb on + strand, within RR42_RS04225at 935.205 kb on + strand, within RR42_RS04225at 935.258 kb on + strandat 935.258 kb on + strandat 935.335 kb on + strandat 935.336 kb on - strandat 935.336 kb on - strandat 935.362 kb on + strandat 935.363 kb on - strandat 935.613 kb on + strandat 935.613 kb on + strandat 935.614 kb on - strandat 935.614 kb on - strandat 935.614 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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932,809 + RR42_RS04210 0.61 +1.2
932,809 + RR42_RS04210 0.61 +0.5
932,923 + RR42_RS04210 0.70 -0.6
932,923 + RR42_RS04210 0.70 -0.0
932,923 + RR42_RS04210 0.70 -0.1
932,923 + RR42_RS04210 0.70 -0.6
932,924 - RR42_RS04210 0.70 -0.3
932,924 - RR42_RS04210 0.70 +0.0
932,924 - RR42_RS04210 0.70 -0.1
932,924 - RR42_RS04210 0.70 -0.3
933,019 + RR42_RS04210 0.78 -1.4
933,020 - RR42_RS04210 0.78 -0.3
933,265 + -1.2
933,265 + -0.4
933,266 - -1.0
933,266 - +1.7
933,266 - +0.1
933,413 + RR42_RS04215 0.23 -1.2
933,445 + RR42_RS04215 0.30 +0.3
933,446 - RR42_RS04215 0.30 -0.3
933,446 - RR42_RS04215 0.30 -0.1
933,532 + RR42_RS04215 0.47 -1.5
933,532 + RR42_RS04215 0.47 +0.1
933,532 + RR42_RS04215 0.47 -1.0
933,532 + RR42_RS04215 0.47 -0.1
933,533 - RR42_RS04215 0.47 -0.6
933,533 - RR42_RS04215 0.47 +0.3
933,533 - RR42_RS04215 0.47 +0.0
933,533 - RR42_RS04215 0.47 -1.0
933,533 - RR42_RS04215 0.47 -0.7
933,534 + RR42_RS04215 0.47 -1.0
933,534 + RR42_RS04215 0.47 +0.1
933,534 + RR42_RS04215 0.47 -0.3
933,534 + RR42_RS04215 0.47 -1.6
933,535 - RR42_RS04215 0.47 -0.1
933,535 - RR42_RS04215 0.47 -1.0
933,535 - RR42_RS04215 0.47 -0.1
933,535 - RR42_RS04215 0.47 -1.4
933,535 - RR42_RS04215 0.47 -0.3
934,185 + RR42_RS04220 0.44 -3.1
934,186 - RR42_RS04220 0.44 -0.8
934,392 + RR42_RS04220 0.68 -0.0
934,392 + RR42_RS04220 0.68 -2.3
934,424 + RR42_RS04220 0.72 +1.7
934,464 + RR42_RS04220 0.76 -0.2
934,610 + -0.7
934,666 + +0.3
934,667 - -0.2
934,667 - -0.6
934,667 - -0.4
934,667 - +0.1
934,670 + +0.1
934,670 + -1.2
934,670 + -0.5
934,670 + -0.4
934,671 - -0.6
934,671 - -0.2
934,671 - +1.3
934,671 - -0.4
934,671 - +0.5
934,671 - +0.9
934,806 + RR42_RS04225 0.20 +1.0
934,807 - RR42_RS04225 0.20 +0.7
934,807 - RR42_RS04225 0.20 -0.3
934,826 - RR42_RS04225 0.23 -0.8
934,827 + RR42_RS04225 0.23 -0.2
934,827 + RR42_RS04225 0.23 +0.2
934,828 - RR42_RS04225 0.24 +0.2
934,828 - RR42_RS04225 0.24 +2.2
934,828 - RR42_RS04225 0.24 -0.1
934,828 - RR42_RS04225 0.24 +0.6
935,091 + RR42_RS04225 0.66 +0.5
935,092 - RR42_RS04225 0.66 -0.7
935,092 - RR42_RS04225 0.66 -0.5
935,105 - RR42_RS04225 0.68 -0.1
935,143 - RR42_RS04225 0.74 -1.1
935,205 + RR42_RS04225 0.84 +0.1
935,205 + RR42_RS04225 0.84 +0.1
935,258 + +0.7
935,258 + -2.7
935,335 + -0.8
935,336 - -0.5
935,336 - -1.0
935,362 + +1.7
935,363 - +0.6
935,613 + +0.3
935,613 + -0.3
935,614 - -0.8
935,614 - +0.0
935,614 - +1.8

Or see this region's nucleotide sequence