Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03970

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS03965 and RR42_RS03970 are separated by 699 nucleotidesRR42_RS03970 and RR42_RS03975 are separated by 7 nucleotidesRR42_RS03975 and RR42_RS03980 are separated by 414 nucleotides RR42_RS03965: RR42_RS03965 - DNA-binding protein, at 874,823 to 875,425 _RS03965 RR42_RS03970: RR42_RS03970 - glycosyl transferase family 2, at 876,125 to 876,940 _RS03970 RR42_RS03975: RR42_RS03975 - acetyltransferase, at 876,948 to 877,514 _RS03975 RR42_RS03980: RR42_RS03980 - Fis family transcriptional regulator, at 877,929 to 879,251 _RS03980 Position (kb) 876 877Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 875.272 kb on + strand, within RR42_RS03965at 875.272 kb on + strand, within RR42_RS03965at 875.272 kb on + strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.273 kb on - strand, within RR42_RS03965at 875.276 kb on + strand, within RR42_RS03965at 875.276 kb on + strand, within RR42_RS03965at 875.276 kb on + strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.277 kb on - strand, within RR42_RS03965at 875.339 kb on + strand, within RR42_RS03965at 875.340 kb on - strand, within RR42_RS03965at 875.388 kb on + strandat 875.388 kb on + strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.389 kb on - strandat 875.392 kb on - strandat 875.442 kb on + strandat 875.443 kb on - strandat 875.521 kb on + strandat 875.521 kb on + strandat 875.559 kb on - strandat 875.559 kb on - strandat 875.559 kb on - strandat 875.637 kb on + strandat 875.637 kb on + strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.638 kb on - strandat 875.689 kb on - strandat 875.689 kb on - strandat 875.704 kb on + strandat 875.705 kb on - strandat 875.705 kb on - strandat 875.774 kb on + strandat 875.775 kb on - strandat 875.775 kb on - strandat 875.828 kb on + strandat 875.829 kb on - strandat 875.829 kb on - strandat 875.871 kb on + strandat 875.872 kb on - strandat 875.872 kb on - strandat 875.904 kb on - strandat 875.904 kb on - strandat 875.904 kb on - strandat 875.916 kb on + strandat 875.916 kb on + strandat 875.916 kb on + strandat 875.917 kb on - strandat 875.917 kb on - strandat 876.157 kb on - strandat 876.184 kb on - strandat 876.229 kb on - strand, within RR42_RS03970at 876.229 kb on - strand, within RR42_RS03970at 876.393 kb on + strand, within RR42_RS03970at 876.393 kb on + strand, within RR42_RS03970at 876.394 kb on - strand, within RR42_RS03970at 876.394 kb on - strand, within RR42_RS03970at 876.394 kb on - strand, within RR42_RS03970at 876.513 kb on + strand, within RR42_RS03970at 876.546 kb on + strand, within RR42_RS03970at 876.563 kb on + strand, within RR42_RS03970at 876.563 kb on + strand, within RR42_RS03970at 876.563 kb on + strand, within RR42_RS03970at 876.563 kb on + strand, within RR42_RS03970at 876.564 kb on - strand, within RR42_RS03970at 876.696 kb on + strand, within RR42_RS03970at 876.696 kb on + strand, within RR42_RS03970at 876.696 kb on + strand, within RR42_RS03970at 876.696 kb on + strand, within RR42_RS03970at 876.696 kb on + strand, within RR42_RS03970at 876.697 kb on - strand, within RR42_RS03970at 876.697 kb on - strand, within RR42_RS03970at 876.838 kb on - strand, within RR42_RS03970at 876.949 kb on + strandat 877.119 kb on + strand, within RR42_RS03975at 877.119 kb on + strand, within RR42_RS03975at 877.120 kb on - strand, within RR42_RS03975at 877.150 kb on - strand, within RR42_RS03975at 877.174 kb on + strand, within RR42_RS03975at 877.175 kb on - strand, within RR42_RS03975at 877.253 kb on - strand, within RR42_RS03975at 877.331 kb on - strand, within RR42_RS03975at 877.331 kb on - strand, within RR42_RS03975at 877.334 kb on + strand, within RR42_RS03975at 877.334 kb on + strand, within RR42_RS03975at 877.335 kb on - strand, within RR42_RS03975at 877.335 kb on - strand, within RR42_RS03975at 877.335 kb on - strand, within RR42_RS03975at 877.335 kb on - strand, within RR42_RS03975at 877.335 kb on - strand, within RR42_RS03975at 877.829 kb on - strandat 877.892 kb on + strandat 877.892 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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875,272 + RR42_RS03965 0.74 -0.6
875,272 + RR42_RS03965 0.74 -0.6
875,272 + RR42_RS03965 0.74 +0.1
875,273 - RR42_RS03965 0.75 +0.2
875,273 - RR42_RS03965 0.75 -0.5
875,273 - RR42_RS03965 0.75 -0.8
875,273 - RR42_RS03965 0.75 -2.9
875,273 - RR42_RS03965 0.75 -0.1
875,276 + RR42_RS03965 0.75 -3.3
875,276 + RR42_RS03965 0.75 -0.4
875,276 + RR42_RS03965 0.75 -0.1
875,277 - RR42_RS03965 0.75 -0.5
875,277 - RR42_RS03965 0.75 -0.3
875,277 - RR42_RS03965 0.75 -0.1
875,277 - RR42_RS03965 0.75 -0.2
875,277 - RR42_RS03965 0.75 -0.5
875,277 - RR42_RS03965 0.75 +0.2
875,277 - RR42_RS03965 0.75 +0.3
875,277 - RR42_RS03965 0.75 -0.6
875,339 + RR42_RS03965 0.86 -1.2
875,340 - RR42_RS03965 0.86 +0.5
875,388 + +0.1
875,388 + +0.8
875,389 - -1.0
875,389 - -1.4
875,389 - +0.0
875,389 - +0.3
875,389 - -0.4
875,392 - -0.5
875,442 + -0.1
875,443 - +0.1
875,521 + -1.1
875,521 + +0.1
875,559 - -1.6
875,559 - +1.2
875,559 - -1.2
875,637 + -0.9
875,637 + -0.3
875,638 - +0.4
875,638 - +0.9
875,638 - +0.4
875,638 - -0.0
875,638 - +0.2
875,638 - +0.5
875,638 - +0.9
875,638 - -0.3
875,689 - -0.4
875,689 - -0.5
875,704 + -0.2
875,705 - -0.1
875,705 - +0.5
875,774 + +0.5
875,775 - +1.3
875,775 - +0.4
875,828 + -0.9
875,829 - +0.1
875,829 - -0.1
875,871 + -1.4
875,872 - +0.3
875,872 - +0.5
875,904 - -0.0
875,904 - +1.7
875,904 - +0.0
875,916 + +0.4
875,916 + +0.9
875,916 + -0.2
875,917 - -1.0
875,917 - +0.3
876,157 - +0.3
876,184 - +0.9
876,229 - RR42_RS03970 0.13 +1.2
876,229 - RR42_RS03970 0.13 +0.8
876,393 + RR42_RS03970 0.33 -0.5
876,393 + RR42_RS03970 0.33 +0.4
876,394 - RR42_RS03970 0.33 +2.8
876,394 - RR42_RS03970 0.33 +0.8
876,394 - RR42_RS03970 0.33 -0.2
876,513 + RR42_RS03970 0.48 -0.0
876,546 + RR42_RS03970 0.52 -0.1
876,563 + RR42_RS03970 0.54 -0.2
876,563 + RR42_RS03970 0.54 -1.4
876,563 + RR42_RS03970 0.54 -0.2
876,563 + RR42_RS03970 0.54 -1.1
876,564 - RR42_RS03970 0.54 +0.9
876,696 + RR42_RS03970 0.70 -0.2
876,696 + RR42_RS03970 0.70 -2.5
876,696 + RR42_RS03970 0.70 +1.1
876,696 + RR42_RS03970 0.70 -0.6
876,696 + RR42_RS03970 0.70 -0.3
876,697 - RR42_RS03970 0.70 -0.2
876,697 - RR42_RS03970 0.70 +0.0
876,838 - RR42_RS03970 0.87 +0.2
876,949 + -0.2
877,119 + RR42_RS03975 0.30 -0.2
877,119 + RR42_RS03975 0.30 +1.4
877,120 - RR42_RS03975 0.30 +0.6
877,150 - RR42_RS03975 0.36 -0.2
877,174 + RR42_RS03975 0.40 -0.5
877,175 - RR42_RS03975 0.40 -1.1
877,253 - RR42_RS03975 0.54 -0.9
877,331 - RR42_RS03975 0.68 +1.1
877,331 - RR42_RS03975 0.68 +0.5
877,334 + RR42_RS03975 0.68 +0.8
877,334 + RR42_RS03975 0.68 -1.1
877,335 - RR42_RS03975 0.68 -0.2
877,335 - RR42_RS03975 0.68 +1.8
877,335 - RR42_RS03975 0.68 -0.2
877,335 - RR42_RS03975 0.68 -0.7
877,335 - RR42_RS03975 0.68 +0.7
877,829 - -0.1
877,892 + -0.7
877,892 + -0.4

Or see this region's nucleotide sequence