Experiment: R2A with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS03610 and RR42_RS03615 are separated by 118 nucleotides RR42_RS03615 and RR42_RS03620 are separated by 39 nucleotides RR42_RS03620 and RR42_RS03625 are separated by 193 nucleotides RR42_RS03625 and RR42_RS03630 are separated by 335 nucleotides
RR42_RS03610: RR42_RS03610 - alpha/beta hydrolase, at 805,852 to 806,886
_RS03610
RR42_RS03615: RR42_RS03615 - hypothetical protein, at 807,005 to 807,199
_RS03615
RR42_RS03620: RR42_RS03620 - lipid A biosynthesis lauroyl acyltransferase, at 807,239 to 808,117
_RS03620
RR42_RS03625: RR42_RS03625 - hypothetical protein, at 808,311 to 808,550
_RS03625
RR42_RS03630: RR42_RS03630 - cold-shock protein, at 808,886 to 809,089
_RS03630
Position (kb) 807
808
809 Strain fitness (log2 ratio) -2
-1
0
1
2 at 806.429 kb on - strand, within RR42_RS03610 at 806.429 kb on - strand, within RR42_RS03610 at 806.429 kb on - strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.485 kb on + strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.486 kb on - strand, within RR42_RS03610 at 806.488 kb on + strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.489 kb on - strand, within RR42_RS03610 at 806.593 kb on + strand, within RR42_RS03610 at 806.593 kb on + strand, within RR42_RS03610 at 806.594 kb on - strand, within RR42_RS03610 at 806.594 kb on - strand, within RR42_RS03610 at 806.595 kb on - strand, within RR42_RS03610 at 806.884 kb on + strand at 806.885 kb on - strand at 806.932 kb on + strand at 806.933 kb on - strand at 807.018 kb on + strand at 807.018 kb on + strand at 807.066 kb on + strand, within RR42_RS03615 at 807.066 kb on + strand, within RR42_RS03615 at 807.066 kb on + strand, within RR42_RS03615 at 807.067 kb on - strand, within RR42_RS03615 at 807.067 kb on - strand, within RR42_RS03615 at 807.188 kb on + strand at 807.244 kb on - strand at 807.297 kb on + strand at 807.298 kb on - strand at 807.733 kb on - strand, within RR42_RS03620 at 807.861 kb on + strand, within RR42_RS03620 at 807.862 kb on - strand, within RR42_RS03620 at 807.862 kb on - strand, within RR42_RS03620 at 808.009 kb on - strand, within RR42_RS03620 at 808.051 kb on + strand at 808.052 kb on - strand at 808.052 kb on - strand at 808.052 kb on - strand at 808.052 kb on - strand at 808.053 kb on + strand at 808.053 kb on + strand at 808.278 kb on - strand at 808.387 kb on + strand, within RR42_RS03625 at 808.388 kb on - strand, within RR42_RS03625 at 808.482 kb on + strand, within RR42_RS03625 at 808.482 kb on + strand, within RR42_RS03625 at 808.483 kb on - strand, within RR42_RS03625 at 808.483 kb on - strand, within RR42_RS03625 at 808.483 kb on - strand, within RR42_RS03625 at 808.582 kb on + strand at 808.583 kb on - strand at 808.599 kb on + strand at 808.599 kb on + strand at 808.601 kb on + strand at 808.620 kb on + strand at 808.620 kb on + strand at 808.620 kb on + strand at 808.620 kb on + strand at 808.621 kb on - strand at 808.621 kb on - strand at 808.621 kb on - strand at 808.621 kb on - strand at 808.716 kb on + strand at 808.730 kb on - strand at 808.865 kb on - strand at 808.871 kb on + strand at 808.872 kb on - strand at 808.872 kb on - strand at 809.033 kb on + strand, within RR42_RS03630 at 809.087 kb on + strand at 809.111 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol% remove 806,429 - RR42_RS03610 0.56 +0.6 806,429 - RR42_RS03610 0.56 -1.3 806,429 - RR42_RS03610 0.56 +0.3 806,485 + RR42_RS03610 0.61 -0.3 806,485 + RR42_RS03610 0.61 -0.1 806,485 + RR42_RS03610 0.61 +0.2 806,485 + RR42_RS03610 0.61 +0.4 806,485 + RR42_RS03610 0.61 +0.6 806,485 + RR42_RS03610 0.61 +0.6 806,486 - RR42_RS03610 0.61 -0.7 806,486 - RR42_RS03610 0.61 +0.6 806,486 - RR42_RS03610 0.61 -1.0 806,486 - RR42_RS03610 0.61 +0.9 806,486 - RR42_RS03610 0.61 +0.6 806,488 + RR42_RS03610 0.61 +0.5 806,489 - RR42_RS03610 0.62 -0.3 806,489 - RR42_RS03610 0.62 +0.1 806,489 - RR42_RS03610 0.62 +1.1 806,489 - RR42_RS03610 0.62 -0.5 806,489 - RR42_RS03610 0.62 +0.1 806,489 - RR42_RS03610 0.62 -1.3 806,593 + RR42_RS03610 0.72 -0.4 806,593 + RR42_RS03610 0.72 -0.1 806,594 - RR42_RS03610 0.72 -0.7 806,594 - RR42_RS03610 0.72 -0.3 806,595 - RR42_RS03610 0.72 +0.7 806,884 + -0.5 806,885 - +0.3 806,932 + -0.2 806,933 - +0.0 807,018 + +0.5 807,018 + +0.5 807,066 + RR42_RS03615 0.31 -0.7 807,066 + RR42_RS03615 0.31 +0.4 807,066 + RR42_RS03615 0.31 +0.4 807,067 - RR42_RS03615 0.32 -0.3 807,067 - RR42_RS03615 0.32 +0.8 807,188 + -0.7 807,244 - +1.8 807,297 + -1.7 807,298 - -0.3 807,733 - RR42_RS03620 0.56 -0.6 807,861 + RR42_RS03620 0.71 -0.1 807,862 - RR42_RS03620 0.71 -0.8 807,862 - RR42_RS03620 0.71 -1.8 808,009 - RR42_RS03620 0.88 -0.5 808,051 + -0.5 808,052 - -0.3 808,052 - -0.1 808,052 - +1.6 808,052 - -1.5 808,053 + +0.4 808,053 + -0.4 808,278 - +1.8 808,387 + RR42_RS03625 0.32 +0.1 808,388 - RR42_RS03625 0.32 -0.9 808,482 + RR42_RS03625 0.71 +0.2 808,482 + RR42_RS03625 0.71 +0.5 808,483 - RR42_RS03625 0.72 +1.3 808,483 - RR42_RS03625 0.72 +0.7 808,483 - RR42_RS03625 0.72 +0.1 808,582 + +2.1 808,583 - +0.2 808,599 + -0.2 808,599 + -0.2 808,601 + -0.4 808,620 + +0.5 808,620 + -1.0 808,620 + -0.4 808,620 + +0.1 808,621 - +0.0 808,621 - -0.4 808,621 - +0.9 808,621 - -0.1 808,716 + -0.1 808,730 - +0.6 808,865 - -0.2 808,871 + -1.6 808,872 - +0.7 808,872 - -0.1 809,033 + RR42_RS03630 0.72 +0.8 809,087 + +0.2 809,111 - +0.9
Or see this region's nucleotide sequence