Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS03030

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRR42_RS03025 and RR42_RS03030 are separated by 89 nucleotidesRR42_RS03030 and RR42_RS03035 overlap by 4 nucleotidesRR42_RS03035 and RR42_RS03040 overlap by 4 nucleotides RR42_RS03025: RR42_RS03025 - Inner membrane protein (FUSC-like) required for 4-hydroxybenzoate transport, together with NodT, MFP, and DUF1656 proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03030) (from data), at 669,371 to 671,365 _RS03025 RR42_RS03030: RR42_RS03030 - required for 4-hydroxybenzoate transport, together with NodT, MFP, and FUSC proteins (RR42_RS03040, RR42_RS03035, and RR42_RS03025) (from data), at 671,455 to 671,664 _RS03030 RR42_RS03035: RR42_RS03035 - membrane protein, at 671,661 to 672,629 _RS03035 RR42_RS03040: RR42_RS03040 - Outer membrane protein (NodT-like) required for 4-hydroxybenzoate transport, together with FUSC, MFP, and DUF1656 proteins (RR42_RS03025, RR42_RS03035, and RR42_RS03030) (from data), at 672,626 to 674,089 _RS03040 Position (kb) 671 672Strain fitness (log2 ratio) -2 -1 0 1 2at 670.668 kb on - strand, within RR42_RS03025at 670.668 kb on - strand, within RR42_RS03025at 670.714 kb on - strand, within RR42_RS03025at 670.714 kb on - strand, within RR42_RS03025at 670.733 kb on + strand, within RR42_RS03025at 670.833 kb on - strand, within RR42_RS03025at 671.213 kb on + strandat 671.216 kb on + strandat 671.217 kb on - strandat 671.217 kb on - strandat 671.217 kb on - strandat 671.476 kb on + strand, within RR42_RS03030at 671.476 kb on + strand, within RR42_RS03030at 671.476 kb on + strand, within RR42_RS03030at 671.476 kb on + strand, within RR42_RS03030at 671.477 kb on - strand, within RR42_RS03030at 671.477 kb on - strand, within RR42_RS03030at 671.609 kb on + strand, within RR42_RS03030at 671.609 kb on + strand, within RR42_RS03030at 671.610 kb on - strand, within RR42_RS03030at 671.610 kb on - strand, within RR42_RS03030at 671.610 kb on - strand, within RR42_RS03030at 671.610 kb on - strand, within RR42_RS03030at 671.611 kb on + strand, within RR42_RS03030at 671.611 kb on + strand, within RR42_RS03030at 671.611 kb on + strand, within RR42_RS03030at 671.611 kb on + strand, within RR42_RS03030at 671.611 kb on + strand, within RR42_RS03030at 671.612 kb on - strand, within RR42_RS03030at 671.612 kb on - strand, within RR42_RS03030at 671.639 kb on - strand, within RR42_RS03030at 671.639 kb on - strand, within RR42_RS03030at 671.678 kb on + strandat 671.699 kb on + strandat 671.752 kb on - strandat 671.754 kb on + strandat 671.754 kb on + strandat 672.147 kb on + strand, within RR42_RS03035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
remove
670,668 - RR42_RS03025 0.65 +0.1
670,668 - RR42_RS03025 0.65 +0.1
670,714 - RR42_RS03025 0.67 +0.9
670,714 - RR42_RS03025 0.67 -0.7
670,733 + RR42_RS03025 0.68 -0.2
670,833 - RR42_RS03025 0.73 +0.8
671,213 + +1.9
671,216 + -0.6
671,217 - -0.7
671,217 - -0.7
671,217 - -0.7
671,476 + RR42_RS03030 0.10 +0.1
671,476 + RR42_RS03030 0.10 -0.8
671,476 + RR42_RS03030 0.10 -0.1
671,476 + RR42_RS03030 0.10 -1.5
671,477 - RR42_RS03030 0.10 -0.2
671,477 - RR42_RS03030 0.10 -2.3
671,609 + RR42_RS03030 0.73 -0.3
671,609 + RR42_RS03030 0.73 +1.3
671,610 - RR42_RS03030 0.74 -0.1
671,610 - RR42_RS03030 0.74 +0.5
671,610 - RR42_RS03030 0.74 -1.2
671,610 - RR42_RS03030 0.74 -0.7
671,611 + RR42_RS03030 0.74 +0.4
671,611 + RR42_RS03030 0.74 +0.1
671,611 + RR42_RS03030 0.74 +0.1
671,611 + RR42_RS03030 0.74 -0.3
671,611 + RR42_RS03030 0.74 +0.2
671,612 - RR42_RS03030 0.75 +0.1
671,612 - RR42_RS03030 0.75 -0.2
671,639 - RR42_RS03030 0.88 -0.7
671,639 - RR42_RS03030 0.88 -1.0
671,678 + +0.0
671,699 + +0.3
671,752 - -0.7
671,754 + -0.1
671,754 + -0.5
672,147 + RR42_RS03035 0.50 -0.1

Or see this region's nucleotide sequence