Experiment: R2A with Dimethyl Sulfoxide 5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS02330 and RR42_RS02335 are separated by 14 nucleotides RR42_RS02335 and RR42_RS02340 are separated by 20 nucleotides
RR42_RS02330: RR42_RS02330 - trehalose-6-phosphate synthase, at 522,790 to 524,190
_RS02330
RR42_RS02335: RR42_RS02335 - molybdopterin-guanine dinucleotide biosynthesis protein MobA, at 524,205 to 524,810
_RS02335
RR42_RS02340: RR42_RS02340 - lipoprotein, at 524,831 to 525,859
_RS02340
Position (kb) 524
525 Strain fitness (log2 ratio) -2
-1
0
1
2 at 523.269 kb on + strand, within RR42_RS02330 at 523.342 kb on + strand, within RR42_RS02330 at 523.433 kb on - strand, within RR42_RS02330 at 523.540 kb on + strand, within RR42_RS02330 at 523.541 kb on - strand, within RR42_RS02330 at 523.561 kb on + strand, within RR42_RS02330 at 523.562 kb on - strand, within RR42_RS02330 at 523.603 kb on + strand, within RR42_RS02330 at 523.726 kb on + strand, within RR42_RS02330 at 523.727 kb on - strand, within RR42_RS02330 at 523.781 kb on - strand, within RR42_RS02330 at 523.810 kb on + strand, within RR42_RS02330 at 523.962 kb on - strand, within RR42_RS02330 at 524.017 kb on + strand, within RR42_RS02330 at 524.022 kb on + strand, within RR42_RS02330 at 524.023 kb on - strand, within RR42_RS02330 at 524.061 kb on + strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.062 kb on - strand at 524.146 kb on + strand at 524.146 kb on + strand at 524.147 kb on - strand at 524.147 kb on - strand at 524.181 kb on - strand at 524.224 kb on - strand at 524.658 kb on + strand, within RR42_RS02335 at 524.994 kb on + strand, within RR42_RS02340 at 524.994 kb on + strand, within RR42_RS02340 at 524.995 kb on - strand, within RR42_RS02340 at 525.105 kb on + strand, within RR42_RS02340 at 525.106 kb on - strand, within RR42_RS02340 at 525.106 kb on - strand, within RR42_RS02340 at 525.270 kb on + strand, within RR42_RS02340 at 525.271 kb on - strand, within RR42_RS02340 at 525.333 kb on + strand, within RR42_RS02340 at 525.615 kb on + strand, within RR42_RS02340 at 525.791 kb on + strand at 525.792 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol% remove 523,269 + RR42_RS02330 0.34 -0.0 523,342 + RR42_RS02330 0.39 -1.3 523,433 - RR42_RS02330 0.46 -0.1 523,540 + RR42_RS02330 0.54 -0.7 523,541 - RR42_RS02330 0.54 -0.5 523,561 + RR42_RS02330 0.55 +2.6 523,562 - RR42_RS02330 0.55 -1.0 523,603 + RR42_RS02330 0.58 -0.5 523,726 + RR42_RS02330 0.67 -0.0 523,727 - RR42_RS02330 0.67 -0.4 523,781 - RR42_RS02330 0.71 -0.2 523,810 + RR42_RS02330 0.73 -0.4 523,962 - RR42_RS02330 0.84 +0.6 524,017 + RR42_RS02330 0.88 -0.6 524,022 + RR42_RS02330 0.88 -0.2 524,023 - RR42_RS02330 0.88 +0.3 524,061 + +0.4 524,062 - +0.2 524,062 - -1.2 524,062 - -0.2 524,062 - +0.2 524,146 + -0.8 524,146 + +0.1 524,147 - +1.4 524,147 - -0.4 524,181 - -0.4 524,224 - -0.4 524,658 + RR42_RS02335 0.75 +0.5 524,994 + RR42_RS02340 0.16 -0.7 524,994 + RR42_RS02340 0.16 -0.7 524,995 - RR42_RS02340 0.16 +1.0 525,105 + RR42_RS02340 0.27 +0.1 525,106 - RR42_RS02340 0.27 -1.1 525,106 - RR42_RS02340 0.27 -2.0 525,270 + RR42_RS02340 0.43 +0.8 525,271 - RR42_RS02340 0.43 -0.8 525,333 + RR42_RS02340 0.49 -0.9 525,615 + RR42_RS02340 0.76 -0.5 525,791 + -0.5 525,792 - -0.5
Or see this region's nucleotide sequence