Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02290

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02285 and RR42_RS02290 overlap by 4 nucleotidesRR42_RS02290 and RR42_RS02295 overlap by 4 nucleotides RR42_RS02285: RR42_RS02285 - mannose-1-phosphate guanyltransferase, at 511,869 to 513,047 _RS02285 RR42_RS02290: RR42_RS02290 - multidrug ABC transporter ATP-binding protein, at 513,044 to 514,057 _RS02290 RR42_RS02295: RR42_RS02295 - secretion protein HlyD, at 514,054 to 515,007 _RS02295 Position (kb) 513 514 515Strain fitness (log2 ratio) -3 -2 -1 0 1at 512.082 kb on + strand, within RR42_RS02285at 512.105 kb on - strand, within RR42_RS02285at 512.105 kb on - strand, within RR42_RS02285at 512.105 kb on - strand, within RR42_RS02285at 512.206 kb on + strand, within RR42_RS02285at 512.206 kb on + strand, within RR42_RS02285at 512.206 kb on + strand, within RR42_RS02285at 512.299 kb on + strand, within RR42_RS02285at 512.299 kb on + strand, within RR42_RS02285at 512.299 kb on + strand, within RR42_RS02285at 512.299 kb on + strand, within RR42_RS02285at 512.299 kb on + strand, within RR42_RS02285at 512.300 kb on - strand, within RR42_RS02285at 512.458 kb on + strand, within RR42_RS02285at 512.459 kb on - strand, within RR42_RS02285at 512.459 kb on - strand, within RR42_RS02285at 512.773 kb on + strand, within RR42_RS02285at 512.774 kb on - strand, within RR42_RS02285at 512.774 kb on - strand, within RR42_RS02285at 512.774 kb on - strand, within RR42_RS02285at 513.232 kb on + strand, within RR42_RS02290at 513.394 kb on - strand, within RR42_RS02290at 513.401 kb on - strand, within RR42_RS02290at 513.402 kb on + strand, within RR42_RS02290at 513.403 kb on - strand, within RR42_RS02290at 513.439 kb on - strand, within RR42_RS02290at 513.439 kb on - strand, within RR42_RS02290at 513.699 kb on + strand, within RR42_RS02290at 513.700 kb on - strand, within RR42_RS02290at 513.771 kb on + strand, within RR42_RS02290at 513.771 kb on + strand, within RR42_RS02290at 513.772 kb on - strand, within RR42_RS02290at 513.973 kb on - strandat 514.163 kb on + strand, within RR42_RS02295at 514.164 kb on - strand, within RR42_RS02295at 514.164 kb on - strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.202 kb on + strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.203 kb on - strand, within RR42_RS02295at 514.298 kb on + strand, within RR42_RS02295at 514.298 kb on + strand, within RR42_RS02295at 514.298 kb on + strand, within RR42_RS02295at 514.299 kb on - strand, within RR42_RS02295at 514.299 kb on - strand, within RR42_RS02295at 514.299 kb on - strand, within RR42_RS02295at 514.388 kb on + strand, within RR42_RS02295at 514.389 kb on - strand, within RR42_RS02295at 514.389 kb on - strand, within RR42_RS02295at 514.429 kb on + strand, within RR42_RS02295at 514.622 kb on + strand, within RR42_RS02295at 514.919 kb on + strandat 514.919 kb on + strandat 514.919 kb on + strandat 514.919 kb on + strandat 514.920 kb on - strandat 514.960 kb on + strandat 514.960 kb on + strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.961 kb on - strandat 514.961 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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512,082 + RR42_RS02285 0.18 +0.6
512,105 - RR42_RS02285 0.20 +0.4
512,105 - RR42_RS02285 0.20 -0.0
512,105 - RR42_RS02285 0.20 -0.0
512,206 + RR42_RS02285 0.29 -1.2
512,206 + RR42_RS02285 0.29 -0.4
512,206 + RR42_RS02285 0.29 -0.3
512,299 + RR42_RS02285 0.36 -1.5
512,299 + RR42_RS02285 0.36 +0.4
512,299 + RR42_RS02285 0.36 -0.8
512,299 + RR42_RS02285 0.36 -0.1
512,299 + RR42_RS02285 0.36 -3.3
512,300 - RR42_RS02285 0.37 -0.1
512,458 + RR42_RS02285 0.50 +0.8
512,459 - RR42_RS02285 0.50 -1.8
512,459 - RR42_RS02285 0.50 -0.6
512,773 + RR42_RS02285 0.77 +0.4
512,774 - RR42_RS02285 0.77 -0.6
512,774 - RR42_RS02285 0.77 -0.3
512,774 - RR42_RS02285 0.77 -0.1
513,232 + RR42_RS02290 0.19 +0.1
513,394 - RR42_RS02290 0.35 -0.9
513,401 - RR42_RS02290 0.35 +0.2
513,402 + RR42_RS02290 0.35 -0.3
513,403 - RR42_RS02290 0.35 -0.7
513,439 - RR42_RS02290 0.39 -0.5
513,439 - RR42_RS02290 0.39 -0.4
513,699 + RR42_RS02290 0.65 -0.1
513,700 - RR42_RS02290 0.65 -0.3
513,771 + RR42_RS02290 0.72 -1.6
513,771 + RR42_RS02290 0.72 -0.6
513,772 - RR42_RS02290 0.72 -1.0
513,973 - -0.3
514,163 + RR42_RS02295 0.11 -0.8
514,164 - RR42_RS02295 0.12 -0.4
514,164 - RR42_RS02295 0.12 +0.7
514,202 + RR42_RS02295 0.16 -0.6
514,202 + RR42_RS02295 0.16 +0.6
514,202 + RR42_RS02295 0.16 -1.5
514,202 + RR42_RS02295 0.16 -0.7
514,202 + RR42_RS02295 0.16 -0.6
514,203 - RR42_RS02295 0.16 -0.3
514,203 - RR42_RS02295 0.16 -0.0
514,203 - RR42_RS02295 0.16 +0.6
514,203 - RR42_RS02295 0.16 -1.6
514,203 - RR42_RS02295 0.16 +0.2
514,298 + RR42_RS02295 0.26 -0.1
514,298 + RR42_RS02295 0.26 +0.9
514,298 + RR42_RS02295 0.26 -1.6
514,299 - RR42_RS02295 0.26 -0.6
514,299 - RR42_RS02295 0.26 -0.4
514,299 - RR42_RS02295 0.26 +0.7
514,388 + RR42_RS02295 0.35 -1.3
514,389 - RR42_RS02295 0.35 +0.4
514,389 - RR42_RS02295 0.35 -0.1
514,429 + RR42_RS02295 0.39 -1.1
514,622 + RR42_RS02295 0.60 -0.9
514,919 + +0.0
514,919 + -0.5
514,919 + -0.8
514,919 + -0.2
514,920 - +1.0
514,960 + +0.0
514,960 + +0.5
514,961 - -0.2
514,961 - +0.0
514,961 - -0.3
514,961 - -0.3

Or see this region's nucleotide sequence