Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS02235

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS02230 and RR42_RS02235 overlap by 4 nucleotidesRR42_RS02235 and RR42_RS02240 overlap by 1 nucleotides RR42_RS02230: RR42_RS02230 - sulfolactate dehydrogenase, at 493,832 to 494,836 _RS02230 RR42_RS02235: RR42_RS02235 - 3-phosphoglycerate dehydrogenase, at 494,833 to 495,768 _RS02235 RR42_RS02240: RR42_RS02240 - D-galactarate dehydratase, at 495,768 to 496,943 _RS02240 Position (kb) 494 495 496Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 493.845 kb on - strandat 493.992 kb on + strand, within RR42_RS02230at 493.993 kb on - strand, within RR42_RS02230at 493.993 kb on - strand, within RR42_RS02230at 494.048 kb on - strand, within RR42_RS02230at 494.627 kb on + strand, within RR42_RS02230at 494.679 kb on + strand, within RR42_RS02230at 494.679 kb on + strand, within RR42_RS02230at 494.680 kb on - strand, within RR42_RS02230at 494.920 kb on - strandat 494.959 kb on - strand, within RR42_RS02235at 494.971 kb on + strand, within RR42_RS02235at 495.416 kb on + strand, within RR42_RS02235at 495.455 kb on + strand, within RR42_RS02235at 495.535 kb on - strand, within RR42_RS02235at 495.932 kb on + strand, within RR42_RS02240at 495.933 kb on - strand, within RR42_RS02240at 495.933 kb on - strand, within RR42_RS02240at 495.933 kb on - strand, within RR42_RS02240at 496.042 kb on + strand, within RR42_RS02240at 496.179 kb on - strand, within RR42_RS02240at 496.352 kb on + strand, within RR42_RS02240at 496.353 kb on - strand, within RR42_RS02240at 496.467 kb on - strand, within RR42_RS02240at 496.541 kb on - strand, within RR42_RS02240

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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493,845 - -0.7
493,992 + RR42_RS02230 0.16 -0.3
493,993 - RR42_RS02230 0.16 +0.5
493,993 - RR42_RS02230 0.16 +0.4
494,048 - RR42_RS02230 0.21 +0.7
494,627 + RR42_RS02230 0.79 +0.4
494,679 + RR42_RS02230 0.84 +0.6
494,679 + RR42_RS02230 0.84 +0.3
494,680 - RR42_RS02230 0.84 +2.1
494,920 - -0.9
494,959 - RR42_RS02235 0.13 -0.6
494,971 + RR42_RS02235 0.15 -0.1
495,416 + RR42_RS02235 0.62 -0.8
495,455 + RR42_RS02235 0.66 -2.8
495,535 - RR42_RS02235 0.75 +0.1
495,932 + RR42_RS02240 0.14 -0.6
495,933 - RR42_RS02240 0.14 -0.1
495,933 - RR42_RS02240 0.14 +0.1
495,933 - RR42_RS02240 0.14 +0.0
496,042 + RR42_RS02240 0.23 -0.6
496,179 - RR42_RS02240 0.35 +0.3
496,352 + RR42_RS02240 0.50 +0.4
496,353 - RR42_RS02240 0.50 +1.0
496,467 - RR42_RS02240 0.59 +0.5
496,541 - RR42_RS02240 0.66 -0.4

Or see this region's nucleotide sequence