Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS00685

Experiment: R2A with Dimethyl Sulfoxide 5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRR42_RS00675 and RR42_RS00680 are separated by 57 nucleotidesRR42_RS00680 and RR42_RS00685 overlap by 4 nucleotidesRR42_RS00685 and RR42_RS00690 are separated by 41 nucleotides RR42_RS00675: RR42_RS00675 - ABC transporter, at 172,962 to 173,654 _RS00675 RR42_RS00680: RR42_RS00680 - ABC transporter permease, at 173,712 to 174,653 _RS00680 RR42_RS00685: RR42_RS00685 - iron ABC transporter ATP-binding protein, at 174,650 to 175,498 _RS00685 RR42_RS00690: RR42_RS00690 - ABC transporter permease, at 175,540 to 176,661 _RS00690 Position (kb) 174 175 176Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 173.680 kb on + strandat 173.680 kb on + strandat 173.680 kb on + strandat 173.680 kb on + strandat 173.680 kb on + strandat 173.681 kb on - strandat 173.681 kb on - strandat 173.681 kb on - strandat 173.681 kb on - strandat 174.329 kb on - strand, within RR42_RS00680at 174.367 kb on + strand, within RR42_RS00680at 174.367 kb on + strand, within RR42_RS00680at 174.368 kb on - strand, within RR42_RS00680at 174.368 kb on - strand, within RR42_RS00680at 174.368 kb on - strand, within RR42_RS00680at 174.368 kb on - strand, within RR42_RS00680at 174.538 kb on + strand, within RR42_RS00680at 174.539 kb on - strand, within RR42_RS00680at 174.539 kb on - strand, within RR42_RS00680at 174.766 kb on - strand, within RR42_RS00685at 174.790 kb on + strand, within RR42_RS00685at 174.824 kb on + strand, within RR42_RS00685at 174.824 kb on + strand, within RR42_RS00685at 174.824 kb on + strand, within RR42_RS00685at 174.825 kb on - strand, within RR42_RS00685at 174.945 kb on + strand, within RR42_RS00685at 174.945 kb on + strand, within RR42_RS00685at 174.945 kb on + strand, within RR42_RS00685at 174.945 kb on + strand, within RR42_RS00685at 174.945 kb on + strand, within RR42_RS00685at 174.945 kb on + strand, within RR42_RS00685at 174.946 kb on - strand, within RR42_RS00685at 174.946 kb on - strand, within RR42_RS00685at 174.946 kb on - strand, within RR42_RS00685at 175.537 kb on + strandat 175.537 kb on + strandat 175.538 kb on - strandat 175.543 kb on + strandat 175.543 kb on + strandat 175.544 kb on - strandat 175.544 kb on - strandat 175.544 kb on - strandat 175.789 kb on - strand, within RR42_RS00690at 176.111 kb on + strand, within RR42_RS00690at 176.169 kb on - strand, within RR42_RS00690at 176.180 kb on + strand, within RR42_RS00690at 176.181 kb on - strand, within RR42_RS00690at 176.181 kb on - strandat 176.184 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.346 kb on + strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690at 176.347 kb on - strand, within RR42_RS00690

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Dimethyl Sulfoxide 5 vol%
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173,680 + -0.5
173,680 + -0.6
173,680 + -0.2
173,680 + -0.9
173,680 + -1.4
173,681 - +0.1
173,681 - -1.4
173,681 - +0.1
173,681 - -0.1
174,329 - RR42_RS00680 0.65 +0.7
174,367 + RR42_RS00680 0.70 -0.3
174,367 + RR42_RS00680 0.70 -0.1
174,368 - RR42_RS00680 0.70 -0.8
174,368 - RR42_RS00680 0.70 -0.1
174,368 - RR42_RS00680 0.70 -0.4
174,368 - RR42_RS00680 0.70 -0.1
174,538 + RR42_RS00680 0.88 -0.1
174,539 - RR42_RS00680 0.88 -0.9
174,539 - RR42_RS00680 0.88 +0.3
174,766 - RR42_RS00685 0.14 -0.8
174,790 + RR42_RS00685 0.16 -1.1
174,824 + RR42_RS00685 0.20 -0.6
174,824 + RR42_RS00685 0.20 +0.3
174,824 + RR42_RS00685 0.20 +0.4
174,825 - RR42_RS00685 0.21 -0.8
174,945 + RR42_RS00685 0.35 +0.0
174,945 + RR42_RS00685 0.35 -0.2
174,945 + RR42_RS00685 0.35 -0.5
174,945 + RR42_RS00685 0.35 -0.6
174,945 + RR42_RS00685 0.35 -2.4
174,945 + RR42_RS00685 0.35 -0.1
174,946 - RR42_RS00685 0.35 -1.0
174,946 - RR42_RS00685 0.35 -0.5
174,946 - RR42_RS00685 0.35 +0.3
175,537 + +0.0
175,537 + -0.1
175,538 - -0.1
175,543 + +0.3
175,543 + -0.3
175,544 - +0.6
175,544 - -0.3
175,544 - +0.9
175,789 - RR42_RS00690 0.22 +0.4
176,111 + RR42_RS00690 0.51 +0.7
176,169 - RR42_RS00690 0.56 -0.5
176,180 + RR42_RS00690 0.57 -0.0
176,181 - RR42_RS00690 0.57 +0.1
176,181 - +0.2
176,184 + RR42_RS00690 0.57 +0.9
176,346 + RR42_RS00690 0.72 -1.6
176,346 + RR42_RS00690 0.72 -2.9
176,346 + RR42_RS00690 0.72 +0.5
176,346 + RR42_RS00690 0.72 -0.9
176,346 + RR42_RS00690 0.72 -0.2
176,346 + RR42_RS00690 0.72 +0.2
176,346 + RR42_RS00690 0.72 -0.6
176,346 + RR42_RS00690 0.72 -1.3
176,346 + RR42_RS00690 0.72 -1.4
176,346 + RR42_RS00690 0.72 -0.4
176,346 + RR42_RS00690 0.72 +1.0
176,346 + RR42_RS00690 0.72 -1.1
176,347 - RR42_RS00690 0.72 +0.1
176,347 - RR42_RS00690 0.72 +0.5
176,347 - RR42_RS00690 0.72 -1.0
176,347 - RR42_RS00690 0.72 +1.8
176,347 - RR42_RS00690 0.72 -0.3
176,347 - RR42_RS00690 0.72 -0.5
176,347 - RR42_RS00690 0.72 -0.5
176,347 - RR42_RS00690 0.72 +0.0
176,347 - RR42_RS00690 0.72 -0.4
176,347 - RR42_RS00690 0.72 -2.6
176,347 - RR42_RS00690 0.72 +0.9
176,347 - RR42_RS00690 0.72 -0.4

Or see this region's nucleotide sequence