Strain Fitness in Dechlorosoma suillum PS around Dsui_3202

Experiment: ALP with Nickel (II) chloride 3.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3201 and Dsui_3202 are separated by 92 nucleotidesDsui_3202 and Dsui_3203 are separated by 30 nucleotides Dsui_3201: Dsui_3201 - 3-isopropylmalate dehydratase, large subunit, at 3,436,248 to 3,437,654 _3201 Dsui_3202: Dsui_3202 - Peptidase family M48, at 3,437,747 to 3,438,619 _3202 Dsui_3203: Dsui_3203 - arabinose efflux permease family protein, at 3,438,650 to 3,439,816 _3203 Position (kb) 3437 3438 3439Strain fitness (log2 ratio) -3 -2 -1 0 1at 3437.730 kb on - strandat 3437.838 kb on + strandat 3437.871 kb on - strand, within Dsui_3202at 3437.980 kb on - strand, within Dsui_3202at 3437.998 kb on - strand, within Dsui_3202at 3438.004 kb on - strand, within Dsui_3202at 3438.041 kb on - strand, within Dsui_3202at 3438.093 kb on - strand, within Dsui_3202at 3438.098 kb on - strand, within Dsui_3202at 3438.129 kb on - strand, within Dsui_3202at 3438.252 kb on - strand, within Dsui_3202at 3438.308 kb on - strand, within Dsui_3202at 3438.356 kb on - strand, within Dsui_3202at 3438.369 kb on - strand, within Dsui_3202at 3438.499 kb on - strand, within Dsui_3202at 3438.656 kb on - strandat 3438.693 kb on - strandat 3438.763 kb on - strandat 3438.773 kb on - strand, within Dsui_3203at 3438.773 kb on - strand, within Dsui_3203at 3438.906 kb on - strand, within Dsui_3203at 3439.156 kb on + strandat 3439.202 kb on - strand, within Dsui_3203at 3439.326 kb on - strand, within Dsui_3203at 3439.443 kb on + strandat 3439.486 kb on - strand, within Dsui_3203at 3439.513 kb on - strand, within Dsui_3203at 3439.575 kb on - strand, within Dsui_3203

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM
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3,437,730 - -0.9
3,437,838 + +0.6
3,437,871 - Dsui_3202 0.14 +0.6
3,437,980 - Dsui_3202 0.27 +0.6
3,437,998 - Dsui_3202 0.29 +0.6
3,438,004 - Dsui_3202 0.29 -1.7
3,438,041 - Dsui_3202 0.34 -0.6
3,438,093 - Dsui_3202 0.40 -2.4
3,438,098 - Dsui_3202 0.40 +0.1
3,438,129 - Dsui_3202 0.44 -2.4
3,438,252 - Dsui_3202 0.58 +0.6
3,438,308 - Dsui_3202 0.64 -1.6
3,438,356 - Dsui_3202 0.70 -1.4
3,438,369 - Dsui_3202 0.71 -1.9
3,438,499 - Dsui_3202 0.86 -0.4
3,438,656 - -1.2
3,438,693 - +0.6
3,438,763 - -0.1
3,438,773 - Dsui_3203 0.11 +0.3
3,438,773 - Dsui_3203 0.11 +1.4
3,438,906 - Dsui_3203 0.22 +0.6
3,439,156 + -0.9
3,439,202 - Dsui_3203 0.47 -2.2
3,439,326 - Dsui_3203 0.58 -2.8
3,439,443 + +0.6
3,439,486 - Dsui_3203 0.72 -0.4
3,439,513 - Dsui_3203 0.74 +1.6
3,439,575 - Dsui_3203 0.79 -0.4

Or see this region's nucleotide sequence