Strain Fitness in Dechlorosoma suillum PS around Dsui_3064

Experiment: ALP with Nickel (II) chloride 3.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3062 and Dsui_3063 are separated by 96 nucleotidesDsui_3063 and Dsui_3064 are separated by 69 nucleotidesDsui_3064 and Dsui_3065 are separated by 3 nucleotides Dsui_3062: Dsui_3062 - hypothetical protein, at 3,277,079 to 3,277,570 _3062 Dsui_3063: Dsui_3063 - transcription elongation factor GreA, at 3,277,667 to 3,278,143 _3063 Dsui_3064: Dsui_3064 - carbamoyl-phosphate synthase, large subunit, at 3,278,213 to 3,281,419 _3064 Dsui_3065: Dsui_3065 - carbamoyl-phosphate synthase, small subunit, at 3,281,423 to 3,282,571 _3065 Position (kb) 3278 3279 3280 3281 3282Strain fitness (log2 ratio) -2 -1 0 1at 3277.370 kb on - strand, within Dsui_3062at 3277.440 kb on + strand, within Dsui_3062at 3277.443 kb on - strand, within Dsui_3062at 3277.479 kb on - strand, within Dsui_3062at 3277.519 kb on - strand, within Dsui_3062at 3277.661 kb on - strandat 3277.709 kb on + strandat 3277.771 kb on - strand, within Dsui_3063at 3277.864 kb on + strand, within Dsui_3063at 3277.961 kb on - strand, within Dsui_3063at 3278.078 kb on + strand, within Dsui_3063at 3278.114 kb on + strandat 3278.115 kb on + strandat 3281.430 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM
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3,277,370 - Dsui_3062 0.59 -0.0
3,277,440 + Dsui_3062 0.73 -1.7
3,277,443 - Dsui_3062 0.74 -0.5
3,277,479 - Dsui_3062 0.81 -0.4
3,277,519 - Dsui_3062 0.89 -0.4
3,277,661 - -0.1
3,277,709 + -1.9
3,277,771 - Dsui_3063 0.22 -0.5
3,277,864 + Dsui_3063 0.41 -1.4
3,277,961 - Dsui_3063 0.62 -0.5
3,278,078 + Dsui_3063 0.86 -0.9
3,278,114 + +0.6
3,278,115 + -0.4
3,281,430 - -0.0

Or see this region's nucleotide sequence