Experiment: ALP with Nickel (II) chloride 3.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3062 and Dsui_3063 are separated by 96 nucleotides Dsui_3063 and Dsui_3064 are separated by 69 nucleotides Dsui_3064 and Dsui_3065 are separated by 3 nucleotides
Dsui_3062: Dsui_3062 - hypothetical protein, at 3,277,079 to 3,277,570
_3062
Dsui_3063: Dsui_3063 - transcription elongation factor GreA, at 3,277,667 to 3,278,143
_3063
Dsui_3064: Dsui_3064 - carbamoyl-phosphate synthase, large subunit, at 3,278,213 to 3,281,419
_3064
Dsui_3065: Dsui_3065 - carbamoyl-phosphate synthase, small subunit, at 3,281,423 to 3,282,571
_3065
Position (kb)
3278
3279
3280
3281
3282 Strain fitness (log2 ratio)
-2
-1
0
1 at 3277.370 kb on - strand, within Dsui_3062 at 3277.440 kb on + strand, within Dsui_3062 at 3277.443 kb on - strand, within Dsui_3062 at 3277.479 kb on - strand, within Dsui_3062 at 3277.519 kb on - strand, within Dsui_3062 at 3277.661 kb on - strand at 3277.709 kb on + strand at 3277.771 kb on - strand, within Dsui_3063 at 3277.864 kb on + strand, within Dsui_3063 at 3277.961 kb on - strand, within Dsui_3063 at 3278.078 kb on + strand, within Dsui_3063 at 3278.114 kb on + strand at 3278.115 kb on + strand at 3281.430 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM remove 3,277,370 - Dsui_3062 0.59 -0.0 3,277,440 + Dsui_3062 0.73 -1.7 3,277,443 - Dsui_3062 0.74 -0.5 3,277,479 - Dsui_3062 0.81 -0.4 3,277,519 - Dsui_3062 0.89 -0.4 3,277,661 - -0.1 3,277,709 + -1.9 3,277,771 - Dsui_3063 0.22 -0.5 3,277,864 + Dsui_3063 0.41 -1.4 3,277,961 - Dsui_3063 0.62 -0.5 3,278,078 + Dsui_3063 0.86 -0.9 3,278,114 + +0.6 3,278,115 + -0.4 3,281,430 - -0.0
Or see this region's nucleotide sequence