Experiment: ALP with Nickel (II) chloride 3.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3024 and Dsui_3025 are separated by 82 nucleotides Dsui_3025 and Dsui_3026 are separated by 110 nucleotides Dsui_3026 and Dsui_3027 overlap by 4 nucleotides
Dsui_3024: Dsui_3024 - phosphate transport regulator related to PhoU, at 3,236,158 to 3,236,781
_3024
Dsui_3025: Dsui_3025 - hypothetical protein, at 3,236,864 to 3,237,610
_3025
Dsui_3026: Dsui_3026 - hydrogenase maturation protease, at 3,237,721 to 3,238,218
_3026
Dsui_3027: Dsui_3027 - coenzyme F420-reducing hydrogenase, alpha subunit, at 3,238,215 to 3,239,675
_3027
Position (kb)
3237
3238
3239 Strain fitness (log2 ratio)
-1
0
1 at 3236.744 kb on + strand at 3236.752 kb on - strand at 3236.909 kb on - strand at 3237.269 kb on - strand, within Dsui_3025 at 3237.311 kb on + strand at 3237.377 kb on + strand at 3237.613 kb on - strand at 3237.823 kb on - strand, within Dsui_3026 at 3237.982 kb on - strand, within Dsui_3026 at 3238.066 kb on - strand, within Dsui_3026 at 3238.228 kb on + strand at 3238.291 kb on - strand at 3238.297 kb on - strand at 3238.524 kb on - strand, within Dsui_3027 at 3238.777 kb on - strand, within Dsui_3027 at 3238.953 kb on - strand, within Dsui_3027 at 3238.978 kb on - strand, within Dsui_3027 at 3238.994 kb on + strand, within Dsui_3027 at 3239.002 kb on - strand, within Dsui_3027 at 3239.034 kb on - strand, within Dsui_3027 at 3239.060 kb on - strand, within Dsui_3027
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM remove 3,236,744 + -0.9 3,236,752 - -0.1 3,236,909 - +0.7 3,237,269 - Dsui_3025 0.54 +0.7 3,237,311 + +0.7 3,237,377 + -0.3 3,237,613 - +0.7 3,237,823 - Dsui_3026 0.20 -1.7 3,237,982 - Dsui_3026 0.52 -0.3 3,238,066 - Dsui_3026 0.69 -0.9 3,238,228 + -0.9 3,238,291 - +0.7 3,238,297 - -0.9 3,238,524 - Dsui_3027 0.21 +0.7 3,238,777 - Dsui_3027 0.38 +0.7 3,238,953 - Dsui_3027 0.51 +0.7 3,238,978 - Dsui_3027 0.52 -0.3 3,238,994 + Dsui_3027 0.53 +0.7 3,239,002 - Dsui_3027 0.54 -0.3 3,239,034 - Dsui_3027 0.56 +0.7 3,239,060 - Dsui_3027 0.58 +0.7
Or see this region's nucleotide sequence