Strain Fitness in Dechlorosoma suillum PS around Dsui_2832

Experiment: ALP with Nickel (II) chloride 3.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2831 and Dsui_2832 are separated by 501 nucleotidesDsui_2832 and Dsui_2833 overlap by 25 nucleotidesDsui_2833 and Dsui_2834 are separated by 136 nucleotides Dsui_2831: Dsui_2831 - hypothetical protein, at 3,007,759 to 3,008,490 _2831 Dsui_2832: Dsui_2832 - hypothetical protein, at 3,008,992 to 3,009,474 _2832 Dsui_2833: Dsui_2833 - putative transcriptional regulator, at 3,009,450 to 3,009,686 _2833 Dsui_2834: Dsui_2834 - hypothetical protein, at 3,009,823 to 3,010,575 _2834 Position (kb) 3008 3009 3010Strain fitness (log2 ratio) -3 -2 -1 0 1at 3007.996 kb on + strand, within Dsui_2831at 3007.997 kb on - strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.051 kb on + strand, within Dsui_2831at 3008.059 kb on - strand, within Dsui_2831at 3008.059 kb on - strand, within Dsui_2831at 3008.068 kb on - strand, within Dsui_2831at 3008.068 kb on - strand, within Dsui_2831at 3008.068 kb on - strand, within Dsui_2831at 3008.073 kb on - strand, within Dsui_2831at 3008.091 kb on + strand, within Dsui_2831at 3008.099 kb on - strand, within Dsui_2831at 3008.099 kb on - strand, within Dsui_2831at 3008.099 kb on - strand, within Dsui_2831at 3008.099 kb on - strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.108 kb on + strand, within Dsui_2831at 3008.110 kb on + strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strandat 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strandat 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.116 kb on - strand, within Dsui_2831at 3008.132 kb on + strand, within Dsui_2831at 3008.132 kb on + strand, within Dsui_2831at 3008.140 kb on - strand, within Dsui_2831at 3008.159 kb on - strand, within Dsui_2831at 3008.176 kb on + strand, within Dsui_2831at 3008.186 kb on + strand, within Dsui_2831at 3008.186 kb on + strand, within Dsui_2831at 3008.194 kb on - strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.249 kb on + strand, within Dsui_2831at 3008.250 kb on - strand, within Dsui_2831at 3008.257 kb on - strand, within Dsui_2831at 3008.269 kb on + strand, within Dsui_2831at 3008.269 kb on + strand, within Dsui_2831at 3008.277 kb on - strand, within Dsui_2831at 3008.372 kb on + strand, within Dsui_2831at 3008.380 kb on - strand, within Dsui_2831at 3008.382 kb on + strand, within Dsui_2831at 3008.382 kb on + strand, within Dsui_2831at 3008.385 kb on - strand, within Dsui_2831at 3008.387 kb on + strand, within Dsui_2831at 3008.392 kb on + strand, within Dsui_2831at 3008.392 kb on + strand, within Dsui_2831at 3008.395 kb on - strand, within Dsui_2831at 3008.400 kb on - strand, within Dsui_2831at 3008.400 kb on - strand, within Dsui_2831at 3008.422 kb on + strandat 3008.424 kb on - strandat 3008.427 kb on + strandat 3008.427 kb on + strandat 3008.432 kb on + strandat 3008.432 kb on + strandat 3008.435 kb on - strandat 3008.437 kb on + strandat 3008.437 kb on + strandat 3008.445 kb on - strandat 3008.453 kb on - strandat 3008.471 kb on - strandat 3008.471 kb on - strandat 3008.552 kb on + strandat 3008.552 kb on + strandat 3008.562 kb on - strandat 3008.562 kb on - strandat 3008.571 kb on + strandat 3008.572 kb on - strandat 3008.579 kb on - strandat 3008.589 kb on - strandat 3008.604 kb on - strandat 3008.620 kb on + strandat 3008.670 kb on + strandat 3008.697 kb on + strandat 3008.710 kb on - strandat 3008.765 kb on - strandat 3008.794 kb on + strandat 3008.796 kb on - strandat 3008.862 kb on + strandat 3008.867 kb on + strandat 3008.880 kb on + strandat 3008.888 kb on - strandat 3008.897 kb on + strandat 3008.902 kb on + strandat 3008.934 kb on + strandat 3008.934 kb on - strandat 3008.942 kb on - strandat 3008.949 kb on + strandat 3008.983 kb on - strandat 3009.089 kb on + strand, within Dsui_2832at 3009.108 kb on + strand, within Dsui_2832at 3009.160 kb on + strand, within Dsui_2832at 3009.233 kb on + strand, within Dsui_2832at 3009.233 kb on + strand, within Dsui_2832at 3009.251 kb on + strand, within Dsui_2832at 3009.295 kb on + strand, within Dsui_2832at 3009.333 kb on - strand, within Dsui_2832at 3009.357 kb on + strand, within Dsui_2832at 3009.420 kb on + strand, within Dsui_2832at 3009.432 kb on - strandat 3009.434 kb on + strandat 3009.447 kb on + strandat 3009.447 kb on - strandat 3009.480 kb on + strand, within Dsui_2833at 3009.500 kb on + strand, within Dsui_2833at 3009.500 kb on + strand, within Dsui_2833at 3009.506 kb on - strand, within Dsui_2833at 3009.508 kb on - strand, within Dsui_2833at 3009.526 kb on + strand, within Dsui_2833at 3009.526 kb on + strand, within Dsui_2833at 3009.544 kb on - strand, within Dsui_2833at 3009.557 kb on + strand, within Dsui_2833at 3009.562 kb on + strand, within Dsui_2833at 3009.565 kb on - strand, within Dsui_2833at 3009.620 kb on + strand, within Dsui_2833at 3009.650 kb on - strand, within Dsui_2833at 3009.679 kb on - strandat 3009.742 kb on + strandat 3009.932 kb on + strand, within Dsui_2834at 3009.939 kb on + strand, within Dsui_2834at 3009.947 kb on - strand, within Dsui_2834at 3009.947 kb on - strand, within Dsui_2834at 3009.947 kb on - strand, within Dsui_2834at 3009.959 kb on + strand, within Dsui_2834at 3010.007 kb on + strand, within Dsui_2834at 3010.039 kb on - strand, within Dsui_2834at 3010.060 kb on + strand, within Dsui_2834at 3010.071 kb on + strand, within Dsui_2834at 3010.071 kb on + strand, within Dsui_2834at 3010.079 kb on - strand, within Dsui_2834at 3010.079 kb on - strandat 3010.092 kb on - strand, within Dsui_2834at 3010.114 kb on + strand, within Dsui_2834at 3010.122 kb on - strand, within Dsui_2834at 3010.123 kb on - strand, within Dsui_2834at 3010.177 kb on - strand, within Dsui_2834at 3010.195 kb on - strand, within Dsui_2834at 3010.198 kb on + strand, within Dsui_2834at 3010.198 kb on + strand, within Dsui_2834at 3010.206 kb on + strand, within Dsui_2834at 3010.206 kb on - strand, within Dsui_2834at 3010.213 kb on + strand, within Dsui_2834at 3010.213 kb on + strand, within Dsui_2834at 3010.213 kb on + strand, within Dsui_2834at 3010.221 kb on - strand, within Dsui_2834at 3010.221 kb on - strand, within Dsui_2834at 3010.221 kb on - strand, within Dsui_2834at 3010.221 kb on - strand, within Dsui_2834at 3010.232 kb on + strand, within Dsui_2834at 3010.293 kb on - strand, within Dsui_2834at 3010.296 kb on + strand, within Dsui_2834at 3010.366 kb on + strand, within Dsui_2834at 3010.367 kb on + strand, within Dsui_2834at 3010.378 kb on + strand, within Dsui_2834at 3010.382 kb on + strand, within Dsui_2834at 3010.448 kb on + strand, within Dsui_2834

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM
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3,007,996 + Dsui_2831 0.32 +0.1
3,007,997 - Dsui_2831 0.33 -0.2
3,008,051 + Dsui_2831 0.40 +0.6
3,008,051 + Dsui_2831 0.40 -0.2
3,008,051 + Dsui_2831 0.40 +0.1
3,008,051 + Dsui_2831 0.40 -0.3
3,008,051 + Dsui_2831 0.40 -0.2
3,008,051 + Dsui_2831 0.40 -0.5
3,008,051 + Dsui_2831 0.40 -0.2
3,008,051 + Dsui_2831 0.40 -0.0
3,008,051 + Dsui_2831 0.40 -0.3
3,008,051 + Dsui_2831 0.40 -0.1
3,008,051 + Dsui_2831 0.40 -0.6
3,008,059 - Dsui_2831 0.41 -1.2
3,008,059 - Dsui_2831 0.41 +0.8
3,008,068 - Dsui_2831 0.42 +0.8
3,008,068 - Dsui_2831 0.42 -0.8
3,008,068 - Dsui_2831 0.42 -0.2
3,008,073 - Dsui_2831 0.43 +0.8
3,008,091 + Dsui_2831 0.45 +0.1
3,008,099 - Dsui_2831 0.46 -0.2
3,008,099 - Dsui_2831 0.46 -1.5
3,008,099 - Dsui_2831 0.46 +0.8
3,008,099 - Dsui_2831 0.46 +0.8
3,008,108 + Dsui_2831 0.48 -0.4
3,008,108 + Dsui_2831 0.48 -0.1
3,008,108 + Dsui_2831 0.48 -0.6
3,008,108 + Dsui_2831 0.48 -0.2
3,008,108 + Dsui_2831 0.48 +0.0
3,008,108 + Dsui_2831 0.48 +0.0
3,008,110 + Dsui_2831 0.48 -0.0
3,008,116 - Dsui_2831 0.49 -1.5
3,008,116 - Dsui_2831 0.49 +0.8
3,008,116 - -0.2
3,008,116 - Dsui_2831 0.49 -0.2
3,008,116 - Dsui_2831 0.49 +0.8
3,008,116 - Dsui_2831 0.49 -1.2
3,008,116 - Dsui_2831 0.49 +0.8
3,008,116 - Dsui_2831 0.49 -0.8
3,008,116 - +0.8
3,008,116 - Dsui_2831 0.49 -0.2
3,008,116 - Dsui_2831 0.49 +0.8
3,008,116 - Dsui_2831 0.49 -0.2
3,008,132 + Dsui_2831 0.51 -0.3
3,008,132 + Dsui_2831 0.51 +0.1
3,008,140 - Dsui_2831 0.52 +0.8
3,008,159 - Dsui_2831 0.55 +0.8
3,008,176 + Dsui_2831 0.57 -0.3
3,008,186 + Dsui_2831 0.58 -0.1
3,008,186 + Dsui_2831 0.58 -0.8
3,008,194 - Dsui_2831 0.59 -0.8
3,008,249 + Dsui_2831 0.67 -0.3
3,008,249 + Dsui_2831 0.67 +0.1
3,008,249 + Dsui_2831 0.67 -0.1
3,008,249 + Dsui_2831 0.67 +0.0
3,008,249 + Dsui_2831 0.67 +0.5
3,008,249 + Dsui_2831 0.67 -0.1
3,008,250 - Dsui_2831 0.67 +0.8
3,008,257 - Dsui_2831 0.68 -1.2
3,008,269 + Dsui_2831 0.70 +0.1
3,008,269 + Dsui_2831 0.70 +0.2
3,008,277 - Dsui_2831 0.71 -0.2
3,008,372 + Dsui_2831 0.84 +0.2
3,008,380 - Dsui_2831 0.85 -0.8
3,008,382 + Dsui_2831 0.85 -0.2
3,008,382 + Dsui_2831 0.85 +0.6
3,008,385 - Dsui_2831 0.86 +0.8
3,008,387 + Dsui_2831 0.86 +0.1
3,008,392 + Dsui_2831 0.86 -0.5
3,008,392 + Dsui_2831 0.86 -0.0
3,008,395 - Dsui_2831 0.87 +0.8
3,008,400 - Dsui_2831 0.88 -0.2
3,008,400 - Dsui_2831 0.88 +0.8
3,008,422 + +0.1
3,008,424 - -0.2
3,008,427 + -0.4
3,008,427 + +0.2
3,008,432 + +0.0
3,008,432 + -0.1
3,008,435 - +0.8
3,008,437 + -0.7
3,008,437 + +0.1
3,008,445 - +0.8
3,008,453 - -0.2
3,008,471 - +0.8
3,008,471 - -0.2
3,008,552 + -0.0
3,008,552 + -0.3
3,008,562 - +0.8
3,008,562 - +0.8
3,008,571 + +0.2
3,008,572 - +0.8
3,008,579 - +0.8
3,008,589 - +0.8
3,008,604 - +0.8
3,008,620 + +0.3
3,008,670 + -0.9
3,008,697 + -0.5
3,008,710 - +0.8
3,008,765 - +0.8
3,008,794 + -0.3
3,008,796 - +0.8
3,008,862 + -0.1
3,008,867 + -0.2
3,008,880 + -0.1
3,008,888 - -0.2
3,008,897 + -0.5
3,008,902 + -1.1
3,008,934 + -3.1
3,008,934 - +0.8
3,008,942 - -0.2
3,008,949 + -0.6
3,008,983 - -1.5
3,009,089 + Dsui_2832 0.20 -0.3
3,009,108 + Dsui_2832 0.24 +0.2
3,009,160 + Dsui_2832 0.35 -1.3
3,009,233 + Dsui_2832 0.50 -1.5
3,009,233 + Dsui_2832 0.50 -0.8
3,009,251 + Dsui_2832 0.54 -3.3
3,009,295 + Dsui_2832 0.63 -0.8
3,009,333 - Dsui_2832 0.71 -1.2
3,009,357 + Dsui_2832 0.76 -0.0
3,009,420 + Dsui_2832 0.89 +0.1
3,009,432 - -0.8
3,009,434 + -1.6
3,009,447 + -1.1
3,009,447 - +0.2
3,009,480 + Dsui_2833 0.13 -1.2
3,009,500 + Dsui_2833 0.21 -1.5
3,009,500 + Dsui_2833 0.21 -0.2
3,009,506 - Dsui_2833 0.24 +0.8
3,009,508 - Dsui_2833 0.24 -0.2
3,009,526 + Dsui_2833 0.32 -1.0
3,009,526 + Dsui_2833 0.32 -0.4
3,009,544 - Dsui_2833 0.40 +0.8
3,009,557 + Dsui_2833 0.45 -2.2
3,009,562 + Dsui_2833 0.47 -0.8
3,009,565 - Dsui_2833 0.49 -0.2
3,009,620 + Dsui_2833 0.72 -0.8
3,009,650 - Dsui_2833 0.84 +0.8
3,009,679 - -0.2
3,009,742 + -0.2
3,009,932 + Dsui_2834 0.14 +0.8
3,009,939 + Dsui_2834 0.15 +0.8
3,009,947 - Dsui_2834 0.16 +0.8
3,009,947 - Dsui_2834 0.16 -0.2
3,009,947 - Dsui_2834 0.16 +0.8
3,009,959 + Dsui_2834 0.18 +0.8
3,010,007 + Dsui_2834 0.24 +0.8
3,010,039 - Dsui_2834 0.29 -0.2
3,010,060 + Dsui_2834 0.31 -0.2
3,010,071 + Dsui_2834 0.33 -0.2
3,010,071 + Dsui_2834 0.33 -0.2
3,010,079 - Dsui_2834 0.34 -0.8
3,010,079 - +0.8
3,010,092 - Dsui_2834 0.36 +0.8
3,010,114 + Dsui_2834 0.39 +0.8
3,010,122 - Dsui_2834 0.40 -0.8
3,010,123 - Dsui_2834 0.40 -0.2
3,010,177 - Dsui_2834 0.47 -0.8
3,010,195 - Dsui_2834 0.49 -0.2
3,010,198 + Dsui_2834 0.50 +0.8
3,010,198 + Dsui_2834 0.50 +0.8
3,010,206 + Dsui_2834 0.51 +0.8
3,010,206 - Dsui_2834 0.51 -0.2
3,010,213 + Dsui_2834 0.52 -0.2
3,010,213 + Dsui_2834 0.52 -0.2
3,010,213 + Dsui_2834 0.52 +0.8
3,010,221 - Dsui_2834 0.53 -1.2
3,010,221 - Dsui_2834 0.53 -2.0
3,010,221 - Dsui_2834 0.53 +0.8
3,010,221 - Dsui_2834 0.53 +0.8
3,010,232 + Dsui_2834 0.54 +0.8
3,010,293 - Dsui_2834 0.62 +0.8
3,010,296 + Dsui_2834 0.63 +0.8
3,010,366 + Dsui_2834 0.72 +0.8
3,010,367 + Dsui_2834 0.72 -0.2
3,010,378 + Dsui_2834 0.74 -0.2
3,010,382 + Dsui_2834 0.74 +0.8
3,010,448 + Dsui_2834 0.83 -0.8

Or see this region's nucleotide sequence