Experiment: ALP with Nickel (II) chloride 3.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2742 and Dsui_2743 are separated by 443 nucleotides Dsui_2743 and Dsui_2744 are separated by 135 nucleotides Dsui_2744 and Dsui_2745 are separated by 97 nucleotides
Dsui_2742: Dsui_2742 - molecular chaperone, at 2,896,302 to 2,897,567
_2742
Dsui_2743: Dsui_2743 - Integral membrane protein CcmA involved in cell shape determination, at 2,898,011 to 2,898,619
_2743
Dsui_2744: Dsui_2744 - Protein of unknown function (DUF1236), at 2,898,755 to 2,899,300
_2744
Dsui_2745: Dsui_2745 - methyl-accepting chemotaxis protein, at 2,899,398 to 2,901,026
_2745
Position (kb)
2898
2899 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2897.131 kb on - strand, within Dsui_2742 at 2897.133 kb on - strand, within Dsui_2742 at 2897.187 kb on + strand, within Dsui_2742 at 2897.280 kb on - strand, within Dsui_2742 at 2897.297 kb on - strand, within Dsui_2742 at 2897.325 kb on + strand at 2897.410 kb on - strand, within Dsui_2742 at 2897.435 kb on - strand, within Dsui_2742 at 2897.470 kb on - strand at 2897.521 kb on - strand at 2897.814 kb on + strand at 2897.873 kb on + strand at 2898.269 kb on - strand at 2898.446 kb on + strand at 2898.582 kb on + strand at 2898.621 kb on - strand at 2898.728 kb on + strand at 2898.728 kb on + strand at 2898.801 kb on + strand at 2898.801 kb on + strand at 2898.883 kb on + strand, within Dsui_2744 at 2898.904 kb on - strand at 2899.163 kb on - strand, within Dsui_2744 at 2899.210 kb on - strand at 2899.230 kb on + strand, within Dsui_2744 at 2899.260 kb on + strand at 2899.445 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM remove 2,897,131 - Dsui_2742 0.65 -0.4 2,897,133 - Dsui_2742 0.66 -0.4 2,897,187 + Dsui_2742 0.70 -3.2 2,897,280 - Dsui_2742 0.77 -0.6 2,897,297 - Dsui_2742 0.79 -0.8 2,897,325 + -0.3 2,897,410 - Dsui_2742 0.88 -0.7 2,897,435 - Dsui_2742 0.89 -0.3 2,897,470 - -0.7 2,897,521 - -1.1 2,897,814 + -0.3 2,897,873 + +0.7 2,898,269 - +0.8 2,898,446 + +0.8 2,898,582 + -1.2 2,898,621 - +0.8 2,898,728 + -0.8 2,898,728 + +0.8 2,898,801 + -0.1 2,898,801 + -0.4 2,898,883 + Dsui_2744 0.23 -0.6 2,898,904 - +0.8 2,899,163 - Dsui_2744 0.75 -0.2 2,899,210 - -0.8 2,899,230 + Dsui_2744 0.87 +0.0 2,899,260 + -2.0 2,899,445 + +0.8
Or see this region's nucleotide sequence