Strain Fitness in Dechlorosoma suillum PS around Dsui_2423

Experiment: ALP with Nickel (II) chloride 3.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2421 and Dsui_2422 are separated by 47 nucleotidesDsui_2422 and Dsui_2423 are separated by 270 nucleotidesDsui_2423 and Dsui_2424 are separated by 5 nucleotidesDsui_2424 and Dsui_2425 are separated by 39 nucleotides Dsui_2421: Dsui_2421 - EAL domain-containing protein, at 2,579,922 to 2,581,223 _2421 Dsui_2422: Dsui_2422 - truncated hemoglobin, at 2,581,271 to 2,581,657 _2422 Dsui_2423: Dsui_2423 - GTP-binding protein TypA/BipA, at 2,581,928 to 2,583,742 _2423 Dsui_2424: Dsui_2424 - hypothetical protein, at 2,583,748 to 2,583,906 _2424 Dsui_2425: Dsui_2425 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,583,946 to 2,585,865 _2425 Position (kb) 2581 2582 2583 2584Strain fitness (log2 ratio) -2 -1 0 1 2at 2580.937 kb on - strand, within Dsui_2421at 2580.958 kb on + strand, within Dsui_2421at 2580.958 kb on + strand, within Dsui_2421at 2580.976 kb on + strand, within Dsui_2421at 2580.989 kb on + strand, within Dsui_2421at 2581.029 kb on + strand, within Dsui_2421at 2581.153 kb on + strandat 2581.181 kb on + strandat 2581.198 kb on - strandat 2581.198 kb on - strandat 2581.307 kb on + strandat 2581.398 kb on + strand, within Dsui_2422at 2581.406 kb on - strandat 2581.407 kb on + strand, within Dsui_2422at 2581.413 kb on + strandat 2581.451 kb on - strand, within Dsui_2422at 2581.530 kb on + strand, within Dsui_2422at 2581.556 kb on + strand, within Dsui_2422at 2581.563 kb on + strand, within Dsui_2422at 2581.749 kb on + strandat 2581.842 kb on + strandat 2581.886 kb on + strandat 2581.886 kb on + strandat 2583.857 kb on - strand, within Dsui_2424at 2583.984 kb on + strandat 2584.070 kb on + strandat 2584.091 kb on - strandat 2584.170 kb on - strand, within Dsui_2425at 2584.230 kb on - strand, within Dsui_2425at 2584.332 kb on + strand, within Dsui_2425at 2584.353 kb on - strand, within Dsui_2425at 2584.516 kb on + strand, within Dsui_2425at 2584.532 kb on - strand, within Dsui_2425at 2584.661 kb on - strand, within Dsui_2425

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM
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2,580,937 - Dsui_2421 0.78 -0.3
2,580,958 + Dsui_2421 0.80 -0.4
2,580,958 + Dsui_2421 0.80 +0.3
2,580,976 + Dsui_2421 0.81 -1.6
2,580,989 + Dsui_2421 0.82 +2.1
2,581,029 + Dsui_2421 0.85 -0.9
2,581,153 + -0.7
2,581,181 + -1.0
2,581,198 - -0.8
2,581,198 - -0.4
2,581,307 + +2.1
2,581,398 + Dsui_2422 0.33 -0.9
2,581,406 - -1.6
2,581,407 + Dsui_2422 0.35 -2.1
2,581,413 + -1.3
2,581,451 - Dsui_2422 0.47 -0.8
2,581,530 + Dsui_2422 0.67 +0.1
2,581,556 + Dsui_2422 0.74 -1.1
2,581,563 + Dsui_2422 0.75 -2.7
2,581,749 + -1.1
2,581,842 + -0.0
2,581,886 + -0.6
2,581,886 + -0.2
2,583,857 - Dsui_2424 0.69 -2.3
2,583,984 + -0.3
2,584,070 + -0.3
2,584,091 - -2.0
2,584,170 - Dsui_2425 0.12 +0.4
2,584,230 - Dsui_2425 0.15 -0.4
2,584,332 + Dsui_2425 0.20 +0.7
2,584,353 - Dsui_2425 0.21 -0.4
2,584,516 + Dsui_2425 0.30 +0.7
2,584,532 - Dsui_2425 0.31 +0.1
2,584,661 - Dsui_2425 0.37 -0.2

Or see this region's nucleotide sequence