Strain Fitness in Dechlorosoma suillum PS around Dsui_2159

Experiment: ALP with Nickel (II) chloride 3.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2157 and Dsui_2158 overlap by 20 nucleotidesDsui_2158 and Dsui_2159 are separated by 237 nucleotidesDsui_2159 and Dsui_2160 overlap by 4 nucleotides Dsui_2157: Dsui_2157 - PAS domain S-box, at 2,288,246 to 2,290,624 _2157 Dsui_2158: Dsui_2158 - response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 2,290,605 to 2,291,252 _2158 Dsui_2159: Dsui_2159 - methyl-accepting chemotaxis protein, at 2,291,490 to 2,292,758 _2159 Dsui_2160: Dsui_2160 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 2,292,755 to 2,294,710 _2160 Position (kb) 2291 2292 2293Strain fitness (log2 ratio) -2 -1 0 1 2at 2290.582 kb on + strandat 2290.587 kb on + strandat 2290.587 kb on + strandat 2290.653 kb on + strandat 2290.697 kb on + strand, within Dsui_2158at 2290.761 kb on + strand, within Dsui_2158at 2290.770 kb on - strandat 2291.110 kb on + strandat 2291.332 kb on - strandat 2291.434 kb on + strandat 2291.613 kb on + strandat 2291.656 kb on + strand, within Dsui_2159at 2291.670 kb on - strand, within Dsui_2159at 2291.673 kb on + strand, within Dsui_2159at 2291.673 kb on + strand, within Dsui_2159at 2291.709 kb on + strand, within Dsui_2159at 2291.760 kb on - strand, within Dsui_2159at 2291.804 kb on - strandat 2291.819 kb on + strand, within Dsui_2159at 2291.909 kb on + strand, within Dsui_2159at 2291.914 kb on + strand, within Dsui_2159at 2291.914 kb on + strand, within Dsui_2159at 2291.956 kb on - strandat 2292.024 kb on + strandat 2292.024 kb on + strand, within Dsui_2159at 2292.024 kb on + strand, within Dsui_2159at 2292.037 kb on - strandat 2292.039 kb on + strand, within Dsui_2159at 2292.292 kb on - strandat 2292.446 kb on + strand, within Dsui_2159at 2292.532 kb on + strand, within Dsui_2159at 2292.553 kb on + strand, within Dsui_2159at 2292.949 kb on + strandat 2293.025 kb on - strandat 2293.045 kb on - strandat 2293.074 kb on + strand, within Dsui_2160at 2293.157 kb on - strandat 2293.157 kb on - strandat 2293.173 kb on - strandat 2293.219 kb on + strand, within Dsui_2160at 2293.287 kb on + strand, within Dsui_2160at 2293.338 kb on - strand, within Dsui_2160at 2293.409 kb on + strand, within Dsui_2160at 2293.436 kb on - strand, within Dsui_2160at 2293.446 kb on - strand, within Dsui_2160at 2293.521 kb on + strand, within Dsui_2160at 2293.529 kb on - strandat 2293.556 kb on + strand, within Dsui_2160at 2293.674 kb on + strand, within Dsui_2160at 2293.754 kb on + strand, within Dsui_2160

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM
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2,290,582 + -0.8
2,290,587 + +1.0
2,290,587 + -1.0
2,290,653 + -0.6
2,290,697 + Dsui_2158 0.14 -1.3
2,290,761 + Dsui_2158 0.24 -0.0
2,290,770 - -0.0
2,291,110 + +1.0
2,291,332 - -2.0
2,291,434 + +0.5
2,291,613 + -0.2
2,291,656 + Dsui_2159 0.13 -0.0
2,291,670 - Dsui_2159 0.14 -0.0
2,291,673 + Dsui_2159 0.14 +0.3
2,291,673 + Dsui_2159 0.14 +0.6
2,291,709 + Dsui_2159 0.17 +0.1
2,291,760 - Dsui_2159 0.21 +1.0
2,291,804 - +1.0
2,291,819 + Dsui_2159 0.26 +0.1
2,291,909 + Dsui_2159 0.33 -0.8
2,291,914 + Dsui_2159 0.33 -0.0
2,291,914 + Dsui_2159 0.33 +0.8
2,291,956 - -0.6
2,292,024 + +2.0
2,292,024 + Dsui_2159 0.42 +0.5
2,292,024 + Dsui_2159 0.42 -0.2
2,292,037 - -0.6
2,292,039 + Dsui_2159 0.43 +0.2
2,292,292 - +1.0
2,292,446 + Dsui_2159 0.75 -0.2
2,292,532 + Dsui_2159 0.82 +0.4
2,292,553 + Dsui_2159 0.84 -0.4
2,292,949 + +0.3
2,293,025 - -0.0
2,293,045 - +1.0
2,293,074 + Dsui_2160 0.16 -0.2
2,293,157 - +1.0
2,293,157 - +1.0
2,293,173 - +1.0
2,293,219 + Dsui_2160 0.24 +0.0
2,293,287 + Dsui_2160 0.27 -0.7
2,293,338 - Dsui_2160 0.30 -0.0
2,293,409 + Dsui_2160 0.33 -0.4
2,293,436 - Dsui_2160 0.35 -1.0
2,293,446 - Dsui_2160 0.35 -1.3
2,293,521 + Dsui_2160 0.39 -0.0
2,293,529 - +1.0
2,293,556 + Dsui_2160 0.41 -0.2
2,293,674 + Dsui_2160 0.47 +0.6
2,293,754 + Dsui_2160 0.51 -0.6

Or see this region's nucleotide sequence