Strain Fitness in Dechlorosoma suillum PS around Dsui_1623

Experiment: ALP with Nickel (II) chloride 3.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1622 and Dsui_1623 are separated by 220 nucleotidesDsui_1623 and Dsui_1624 are separated by 152 nucleotidesDsui_1624 and Dsui_1625 are separated by 70 nucleotides Dsui_1622: Dsui_1622 - excinuclease ABC, A subunit, at 1,703,943 to 1,706,762 _1622 Dsui_1623: Dsui_1623 - tRNA-Thr, at 1,706,983 to 1,707,058 _1623 Dsui_1624: Dsui_1624 - dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein, at 1,707,211 to 1,707,978 _1624 Dsui_1625: Dsui_1625 - copper/silver-translocating P-type ATPase, at 1,708,049 to 1,710,490 _1625 Position (kb) 1706 1707 1708Strain fitness (log2 ratio) -2 -1 0 1at 1706.002 kb on - strand, within Dsui_1622at 1706.146 kb on - strand, within Dsui_1622at 1706.148 kb on + strand, within Dsui_1622at 1706.156 kb on - strand, within Dsui_1622at 1706.167 kb on - strand, within Dsui_1622at 1706.187 kb on - strand, within Dsui_1622at 1706.255 kb on + strand, within Dsui_1622at 1706.421 kb on - strand, within Dsui_1622at 1706.473 kb on + strand, within Dsui_1622at 1706.702 kb on + strandat 1706.731 kb on - strandat 1706.731 kb on - strandat 1706.731 kb on - strandat 1706.776 kb on - strandat 1706.776 kb on - strandat 1706.788 kb on - strandat 1706.809 kb on + strandat 1706.953 kb on + strandat 1707.077 kb on + strandat 1707.080 kb on + strandat 1707.088 kb on - strandat 1707.199 kb on + strandat 1707.207 kb on - strandat 1707.217 kb on + strandat 1707.321 kb on + strand, within Dsui_1624at 1707.388 kb on - strandat 1707.394 kb on + strand, within Dsui_1624at 1707.407 kb on - strand, within Dsui_1624at 1707.498 kb on + strand, within Dsui_1624at 1707.501 kb on - strandat 1707.530 kb on + strand, within Dsui_1624at 1707.571 kb on - strandat 1707.816 kb on + strand, within Dsui_1624at 1707.834 kb on - strand, within Dsui_1624at 1707.890 kb on + strand, within Dsui_1624at 1707.892 kb on + strand, within Dsui_1624at 1707.910 kb on + strandat 1707.953 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM
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1,706,002 - Dsui_1622 0.73 -0.6
1,706,146 - Dsui_1622 0.78 -0.2
1,706,148 + Dsui_1622 0.78 -0.3
1,706,156 - Dsui_1622 0.78 -1.1
1,706,167 - Dsui_1622 0.79 -0.5
1,706,187 - Dsui_1622 0.80 -0.8
1,706,255 + Dsui_1622 0.82 -1.6
1,706,421 - Dsui_1622 0.88 -0.6
1,706,473 + Dsui_1622 0.90 -1.3
1,706,702 + +0.7
1,706,731 - -2.7
1,706,731 - -1.1
1,706,731 - +0.7
1,706,776 - +0.2
1,706,776 - -0.5
1,706,788 - -0.5
1,706,809 + +0.7
1,706,953 + +0.1
1,707,077 + -0.1
1,707,080 + -0.4
1,707,088 - +0.7
1,707,199 + -2.1
1,707,207 - +0.7
1,707,217 + -0.3
1,707,321 + Dsui_1624 0.14 -1.3
1,707,388 - +0.7
1,707,394 + Dsui_1624 0.24 -0.4
1,707,407 - Dsui_1624 0.26 -0.9
1,707,498 + Dsui_1624 0.37 -1.7
1,707,501 - +0.7
1,707,530 + Dsui_1624 0.42 -2.7
1,707,571 - +0.7
1,707,816 + Dsui_1624 0.79 -0.9
1,707,834 - Dsui_1624 0.81 +0.7
1,707,890 + Dsui_1624 0.88 +0.7
1,707,892 + Dsui_1624 0.89 -0.3
1,707,910 + -0.2
1,707,953 - +0.7

Or see this region's nucleotide sequence