Experiment: ALP with Nickel (II) chloride 3.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1441 and Dsui_1442 are separated by 154 nucleotides Dsui_1442 and Dsui_1443 are separated by 96 nucleotides
Dsui_1441: Dsui_1441 - phenylacetate-CoA ligase, at 1,495,219 to 1,496,523
_1441
Dsui_1442: Dsui_1442 - putative efflux protein, MATE family, at 1,496,678 to 1,498,042
_1442
Dsui_1443: Dsui_1443 - phenylacetate-CoA ligase, at 1,498,139 to 1,499,455
_1443
Position (kb)
1496
1497
1498
1499 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1495.816 kb on - strand, within Dsui_1441 at 1495.868 kb on + strand at 1495.912 kb on - strand, within Dsui_1441 at 1495.956 kb on + strand at 1495.957 kb on - strand, within Dsui_1441 at 1495.960 kb on + strand at 1496.051 kb on + strand at 1496.056 kb on + strand, within Dsui_1441 at 1496.077 kb on - strand, within Dsui_1441 at 1496.168 kb on + strand at 1496.331 kb on - strand, within Dsui_1441 at 1496.346 kb on + strand, within Dsui_1441 at 1496.435 kb on + strand at 1496.572 kb on + strand at 1496.667 kb on - strand at 1496.799 kb on + strand at 1497.000 kb on - strand, within Dsui_1442 at 1497.035 kb on - strand, within Dsui_1442 at 1497.113 kb on - strand at 1497.130 kb on + strand, within Dsui_1442 at 1497.135 kb on - strand at 1497.159 kb on - strand at 1497.430 kb on + strand, within Dsui_1442 at 1497.465 kb on + strand at 1497.528 kb on - strand at 1497.558 kb on - strand at 1497.729 kb on - strand, within Dsui_1442 at 1498.022 kb on - strand at 1498.104 kb on - strand at 1498.240 kb on - strand at 1498.274 kb on - strand, within Dsui_1443 at 1498.578 kb on + strand, within Dsui_1443 at 1498.607 kb on + strand, within Dsui_1443 at 1498.649 kb on + strand, within Dsui_1443 at 1498.791 kb on + strand, within Dsui_1443 at 1498.825 kb on + strand, within Dsui_1443 at 1498.833 kb on - strand, within Dsui_1443 at 1499.021 kb on + strand, within Dsui_1443
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM remove 1,495,816 - Dsui_1441 0.46 -0.3 1,495,868 + +0.7 1,495,912 - Dsui_1441 0.53 -3.0 1,495,956 + -0.3 1,495,957 - Dsui_1441 0.57 -2.1 1,495,960 + -0.9 1,496,051 + +0.7 1,496,056 + Dsui_1441 0.64 -1.6 1,496,077 - Dsui_1441 0.66 -1.5 1,496,168 + +0.7 1,496,331 - Dsui_1441 0.85 -2.0 1,496,346 + Dsui_1441 0.86 -0.3 1,496,435 + -0.3 1,496,572 + -2.3 1,496,667 - +0.7 1,496,799 + +0.1 1,497,000 - Dsui_1442 0.24 -1.3 1,497,035 - Dsui_1442 0.26 -0.9 1,497,113 - +0.7 1,497,130 + Dsui_1442 0.33 +0.7 1,497,135 - +0.7 1,497,159 - -1.3 1,497,430 + Dsui_1442 0.55 -1.6 1,497,465 + +0.7 1,497,528 - -0.9 1,497,558 - -0.3 1,497,729 - Dsui_1442 0.77 -0.3 1,498,022 - -0.3 1,498,104 - +0.7 1,498,240 - -0.9 1,498,274 - Dsui_1443 0.10 -0.3 1,498,578 + Dsui_1443 0.33 -0.9 1,498,607 + Dsui_1443 0.36 -1.3 1,498,649 + Dsui_1443 0.39 -2.3 1,498,791 + Dsui_1443 0.50 +0.7 1,498,825 + Dsui_1443 0.52 +0.7 1,498,833 - Dsui_1443 0.53 -0.3 1,499,021 + Dsui_1443 0.67 +0.7
Or see this region's nucleotide sequence