Experiment: ALP with Nickel (II) chloride 3.5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1321 and Dsui_1322 are separated by 45 nucleotides Dsui_1322 and Dsui_1323 are separated by 317 nucleotides Dsui_1323 and Dsui_1324 overlap by 13 nucleotides
Dsui_1321: Dsui_1321 - ABC-type uncharacterized transport system, permease component, at 1,380,515 to 1,381,354
_1321
Dsui_1322: Dsui_1322 - signal recognition particle protein, at 1,381,400 to 1,382,755
_1322
Dsui_1323: Dsui_1323 - soluble lytic murein transglycosylase-like protein, at 1,383,073 to 1,383,681
_1323
Dsui_1324: Dsui_1324 - prolyl-tRNA synthetase, family II, at 1,383,669 to 1,385,381
_1324
Position (kb)
1381
1382
1383 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1380.466 kb on - strand at 1380.466 kb on - strand at 1380.466 kb on - strand at 1380.599 kb on + strand, within Dsui_1321 at 1380.599 kb on + strand, within Dsui_1321 at 1380.774 kb on - strand, within Dsui_1321 at 1380.990 kb on - strand, within Dsui_1321 at 1381.038 kb on + strand, within Dsui_1321 at 1381.116 kb on - strand, within Dsui_1321 at 1381.116 kb on - strand, within Dsui_1321 at 1381.128 kb on - strand, within Dsui_1321 at 1382.707 kb on + strand at 1382.754 kb on + strand at 1382.774 kb on - strand at 1382.826 kb on + strand at 1382.831 kb on + strand at 1382.839 kb on - strand at 1382.851 kb on + strand at 1382.867 kb on + strand at 1382.867 kb on + strand at 1382.901 kb on - strand at 1382.971 kb on - strand at 1382.987 kb on + strand at 1382.988 kb on - strand at 1382.995 kb on - strand at 1383.002 kb on - strand at 1383.002 kb on - strand at 1383.026 kb on + strand at 1383.044 kb on + strand at 1383.049 kb on + strand at 1383.071 kb on + strand at 1383.071 kb on + strand at 1383.071 kb on + strand at 1383.079 kb on - strand at 1383.079 kb on - strand at 1383.122 kb on + strand at 1383.145 kb on - strand, within Dsui_1323 at 1383.150 kb on + strand, within Dsui_1323 at 1383.150 kb on + strand, within Dsui_1323 at 1383.158 kb on - strand, within Dsui_1323 at 1383.161 kb on + strand, within Dsui_1323 at 1383.187 kb on - strand, within Dsui_1323 at 1383.235 kb on - strand, within Dsui_1323 at 1383.264 kb on + strand, within Dsui_1323 at 1383.296 kb on - strand, within Dsui_1323 at 1383.318 kb on + strand, within Dsui_1323 at 1383.372 kb on - strand, within Dsui_1323 at 1383.411 kb on + strand, within Dsui_1323 at 1383.424 kb on - strand, within Dsui_1323 at 1383.439 kb on - strand, within Dsui_1323 at 1383.535 kb on + strand, within Dsui_1323 at 1383.571 kb on - strand, within Dsui_1323 at 1383.576 kb on - strand, within Dsui_1323 at 1383.576 kb on - strand, within Dsui_1323 at 1383.639 kb on + strand at 1383.647 kb on - strand at 1383.696 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM remove 1,380,466 - -0.0 1,380,466 - -1.7 1,380,466 - -1.2 1,380,599 + Dsui_1321 0.10 -0.4 1,380,599 + Dsui_1321 0.10 -0.4 1,380,774 - Dsui_1321 0.31 -3.7 1,380,990 - Dsui_1321 0.57 -2.7 1,381,038 + Dsui_1321 0.62 -0.4 1,381,116 - Dsui_1321 0.72 -2.0 1,381,116 - Dsui_1321 0.72 -3.0 1,381,128 - Dsui_1321 0.73 -3.2 1,382,707 + -1.7 1,382,754 + -0.5 1,382,774 - +0.6 1,382,826 + +0.1 1,382,831 + -1.0 1,382,839 - -1.0 1,382,851 + -2.9 1,382,867 + +0.6 1,382,867 + -1.3 1,382,901 - -0.1 1,382,971 - -0.3 1,382,987 + -2.8 1,382,988 - -0.6 1,382,995 - +1.3 1,383,002 - +0.2 1,383,002 - -0.4 1,383,026 + -1.4 1,383,044 + -1.4 1,383,049 + -1.8 1,383,071 + +0.6 1,383,071 + -0.4 1,383,071 + -2.0 1,383,079 - -1.4 1,383,079 - -0.2 1,383,122 + -2.0 1,383,145 - Dsui_1323 0.12 -0.6 1,383,150 + Dsui_1323 0.13 -1.4 1,383,150 + Dsui_1323 0.13 -1.0 1,383,158 - Dsui_1323 0.14 -0.3 1,383,161 + Dsui_1323 0.14 +0.6 1,383,187 - Dsui_1323 0.19 -0.3 1,383,235 - Dsui_1323 0.27 -0.1 1,383,264 + Dsui_1323 0.31 -1.8 1,383,296 - Dsui_1323 0.37 -1.0 1,383,318 + Dsui_1323 0.40 -2.8 1,383,372 - Dsui_1323 0.49 -0.1 1,383,411 + Dsui_1323 0.56 -1.4 1,383,424 - Dsui_1323 0.58 -0.4 1,383,439 - Dsui_1323 0.60 -0.8 1,383,535 + Dsui_1323 0.76 -0.4 1,383,571 - Dsui_1323 0.82 -0.7 1,383,576 - Dsui_1323 0.83 -0.4 1,383,576 - Dsui_1323 0.83 -0.6 1,383,639 + -0.4 1,383,647 - -0.3 1,383,696 - -0.1
Or see this region's nucleotide sequence