Strain Fitness in Dechlorosoma suillum PS around Dsui_1322

Experiment: ALP with Nickel (II) chloride 3.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1321 and Dsui_1322 are separated by 45 nucleotidesDsui_1322 and Dsui_1323 are separated by 317 nucleotidesDsui_1323 and Dsui_1324 overlap by 13 nucleotides Dsui_1321: Dsui_1321 - ABC-type uncharacterized transport system, permease component, at 1,380,515 to 1,381,354 _1321 Dsui_1322: Dsui_1322 - signal recognition particle protein, at 1,381,400 to 1,382,755 _1322 Dsui_1323: Dsui_1323 - soluble lytic murein transglycosylase-like protein, at 1,383,073 to 1,383,681 _1323 Dsui_1324: Dsui_1324 - prolyl-tRNA synthetase, family II, at 1,383,669 to 1,385,381 _1324 Position (kb) 1381 1382 1383Strain fitness (log2 ratio) -3 -2 -1 0 1at 1380.466 kb on - strandat 1380.466 kb on - strandat 1380.466 kb on - strandat 1380.599 kb on + strand, within Dsui_1321at 1380.599 kb on + strand, within Dsui_1321at 1380.774 kb on - strand, within Dsui_1321at 1380.990 kb on - strand, within Dsui_1321at 1381.038 kb on + strand, within Dsui_1321at 1381.116 kb on - strand, within Dsui_1321at 1381.116 kb on - strand, within Dsui_1321at 1381.128 kb on - strand, within Dsui_1321at 1382.707 kb on + strandat 1382.754 kb on + strandat 1382.774 kb on - strandat 1382.826 kb on + strandat 1382.831 kb on + strandat 1382.839 kb on - strandat 1382.851 kb on + strandat 1382.867 kb on + strandat 1382.867 kb on + strandat 1382.901 kb on - strandat 1382.971 kb on - strandat 1382.987 kb on + strandat 1382.988 kb on - strandat 1382.995 kb on - strandat 1383.002 kb on - strandat 1383.002 kb on - strandat 1383.026 kb on + strandat 1383.044 kb on + strandat 1383.049 kb on + strandat 1383.071 kb on + strandat 1383.071 kb on + strandat 1383.071 kb on + strandat 1383.079 kb on - strandat 1383.079 kb on - strandat 1383.122 kb on + strandat 1383.145 kb on - strand, within Dsui_1323at 1383.150 kb on + strand, within Dsui_1323at 1383.150 kb on + strand, within Dsui_1323at 1383.158 kb on - strand, within Dsui_1323at 1383.161 kb on + strand, within Dsui_1323at 1383.187 kb on - strand, within Dsui_1323at 1383.235 kb on - strand, within Dsui_1323at 1383.264 kb on + strand, within Dsui_1323at 1383.296 kb on - strand, within Dsui_1323at 1383.318 kb on + strand, within Dsui_1323at 1383.372 kb on - strand, within Dsui_1323at 1383.411 kb on + strand, within Dsui_1323at 1383.424 kb on - strand, within Dsui_1323at 1383.439 kb on - strand, within Dsui_1323at 1383.535 kb on + strand, within Dsui_1323at 1383.571 kb on - strand, within Dsui_1323at 1383.576 kb on - strand, within Dsui_1323at 1383.576 kb on - strand, within Dsui_1323at 1383.639 kb on + strandat 1383.647 kb on - strandat 1383.696 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM
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1,380,466 - -0.0
1,380,466 - -1.7
1,380,466 - -1.2
1,380,599 + Dsui_1321 0.10 -0.4
1,380,599 + Dsui_1321 0.10 -0.4
1,380,774 - Dsui_1321 0.31 -3.7
1,380,990 - Dsui_1321 0.57 -2.7
1,381,038 + Dsui_1321 0.62 -0.4
1,381,116 - Dsui_1321 0.72 -2.0
1,381,116 - Dsui_1321 0.72 -3.0
1,381,128 - Dsui_1321 0.73 -3.2
1,382,707 + -1.7
1,382,754 + -0.5
1,382,774 - +0.6
1,382,826 + +0.1
1,382,831 + -1.0
1,382,839 - -1.0
1,382,851 + -2.9
1,382,867 + +0.6
1,382,867 + -1.3
1,382,901 - -0.1
1,382,971 - -0.3
1,382,987 + -2.8
1,382,988 - -0.6
1,382,995 - +1.3
1,383,002 - +0.2
1,383,002 - -0.4
1,383,026 + -1.4
1,383,044 + -1.4
1,383,049 + -1.8
1,383,071 + +0.6
1,383,071 + -0.4
1,383,071 + -2.0
1,383,079 - -1.4
1,383,079 - -0.2
1,383,122 + -2.0
1,383,145 - Dsui_1323 0.12 -0.6
1,383,150 + Dsui_1323 0.13 -1.4
1,383,150 + Dsui_1323 0.13 -1.0
1,383,158 - Dsui_1323 0.14 -0.3
1,383,161 + Dsui_1323 0.14 +0.6
1,383,187 - Dsui_1323 0.19 -0.3
1,383,235 - Dsui_1323 0.27 -0.1
1,383,264 + Dsui_1323 0.31 -1.8
1,383,296 - Dsui_1323 0.37 -1.0
1,383,318 + Dsui_1323 0.40 -2.8
1,383,372 - Dsui_1323 0.49 -0.1
1,383,411 + Dsui_1323 0.56 -1.4
1,383,424 - Dsui_1323 0.58 -0.4
1,383,439 - Dsui_1323 0.60 -0.8
1,383,535 + Dsui_1323 0.76 -0.4
1,383,571 - Dsui_1323 0.82 -0.7
1,383,576 - Dsui_1323 0.83 -0.4
1,383,576 - Dsui_1323 0.83 -0.6
1,383,639 + -0.4
1,383,647 - -0.3
1,383,696 - -0.1

Or see this region's nucleotide sequence