Strain Fitness in Dechlorosoma suillum PS around Dsui_0956

Experiment: ALP with Nickel (II) chloride 3.5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_0955 and Dsui_0956 are separated by 108 nucleotidesDsui_0956 and Dsui_0957 are separated by 132 nucleotides Dsui_0955: Dsui_0955 - nitrogenase iron protein, at 980,747 to 981,622 _0955 Dsui_0956: Dsui_0956 - nitrogenase molybdenum-iron protein alpha chain, at 981,731 to 983,173 _0956 Dsui_0957: Dsui_0957 - nitrogenase molybdenum-iron protein beta chain, at 983,306 to 984,826 _0957 Position (kb) 981 982 983 984Strain fitness (log2 ratio) -2 -1 0 1at 980.838 kb on - strandat 980.917 kb on - strand, within Dsui_0955at 981.100 kb on - strandat 981.249 kb on - strand, within Dsui_0955at 981.249 kb on - strand, within Dsui_0955at 981.303 kb on - strandat 981.368 kb on - strand, within Dsui_0955at 981.455 kb on - strand, within Dsui_0955at 981.466 kb on + strand, within Dsui_0955at 981.496 kb on - strand, within Dsui_0955at 981.501 kb on - strandat 981.604 kb on + strandat 981.735 kb on + strandat 981.774 kb on + strandat 981.782 kb on - strandat 981.836 kb on - strandat 981.836 kb on - strandat 981.879 kb on - strand, within Dsui_0956at 981.965 kb on + strand, within Dsui_0956at 982.216 kb on + strand, within Dsui_0956at 982.351 kb on + strand, within Dsui_0956at 982.599 kb on + strand, within Dsui_0956at 982.613 kb on + strand, within Dsui_0956at 982.623 kb on + strand, within Dsui_0956at 982.896 kb on + strand, within Dsui_0956at 982.904 kb on - strand, within Dsui_0956at 983.099 kb on + strandat 983.159 kb on + strandat 983.177 kb on - strandat 983.205 kb on + strandat 983.231 kb on + strandat 983.239 kb on - strandat 983.273 kb on - strandat 983.530 kb on + strand, within Dsui_0957at 983.555 kb on + strand, within Dsui_0957at 983.574 kb on + strand, within Dsui_0957at 983.596 kb on + strand, within Dsui_0957at 983.740 kb on - strand, within Dsui_0957at 983.815 kb on - strand, within Dsui_0957at 983.846 kb on + strand, within Dsui_0957at 983.902 kb on + strand, within Dsui_0957at 984.026 kb on + strand, within Dsui_0957at 984.044 kb on - strand, within Dsui_0957

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM
remove
980,838 - +0.8
980,917 - Dsui_0955 0.19 -0.2
981,100 - +0.8
981,249 - Dsui_0955 0.57 -0.8
981,249 - Dsui_0955 0.57 -0.8
981,303 - +0.8
981,368 - Dsui_0955 0.71 -1.2
981,455 - Dsui_0955 0.81 -1.8
981,466 + Dsui_0955 0.82 -0.2
981,496 - Dsui_0955 0.86 +0.8
981,501 - +0.8
981,604 + +0.8
981,735 + +0.8
981,774 + -0.2
981,782 - +0.8
981,836 - +0.7
981,836 - +0.7
981,879 - Dsui_0956 0.10 -2.1
981,965 + Dsui_0956 0.16 -0.8
982,216 + Dsui_0956 0.34 +0.7
982,351 + Dsui_0956 0.43 +0.7
982,599 + Dsui_0956 0.60 +0.7
982,613 + Dsui_0956 0.61 +0.7
982,623 + Dsui_0956 0.62 -0.3
982,896 + Dsui_0956 0.81 +0.7
982,904 - Dsui_0956 0.81 -0.3
983,099 + -0.3
983,159 + +0.7
983,177 - -1.3
983,205 + +0.7
983,231 + +0.7
983,239 - +0.7
983,273 - -0.8
983,530 + Dsui_0957 0.15 -0.3
983,555 + Dsui_0957 0.16 +0.7
983,574 + Dsui_0957 0.18 -0.3
983,596 + Dsui_0957 0.19 +0.7
983,740 - Dsui_0957 0.29 -0.3
983,815 - Dsui_0957 0.33 -0.3
983,846 + Dsui_0957 0.36 -0.3
983,902 + Dsui_0957 0.39 +0.7
984,026 + Dsui_0957 0.47 -0.3
984,044 - Dsui_0957 0.49 +0.7

Or see this region's nucleotide sequence