Strain Fitness in Dechlorosoma suillum PS around Dsui_0786

Experiment: ALP with Nickel (II) chloride 3.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0784 and Dsui_0785 are separated by 8 nucleotidesDsui_0785 and Dsui_0786 are separated by 117 nucleotidesDsui_0786 and Dsui_0787 are separated by 10 nucleotidesDsui_0787 and Dsui_0788 overlap by 40 nucleotides Dsui_0784: Dsui_0784 - hypothetical protein, at 791,338 to 792,546 _0784 Dsui_0785: Dsui_0785 - hypothetical protein, at 792,555 to 793,115 _0785 Dsui_0786: Dsui_0786 - Fe-S oxidoreductase, at 793,233 to 794,123 _0786 Dsui_0787: Dsui_0787 - putative membrane protein, at 794,134 to 794,580 _0787 Dsui_0788: Dsui_0788 - phosphosulfolactate phosphohydrolase-like enzyme, at 794,541 to 795,278 _0788 Position (kb) 793 794 795Strain fitness (log2 ratio) -2 -1 0 1at 792.242 kb on - strand, within Dsui_0784at 792.242 kb on - strand, within Dsui_0784at 792.246 kb on + strand, within Dsui_0784at 792.254 kb on - strand, within Dsui_0784at 792.312 kb on + strand, within Dsui_0784at 792.320 kb on - strand, within Dsui_0784at 792.320 kb on - strand, within Dsui_0784at 792.346 kb on - strand, within Dsui_0784at 792.438 kb on + strandat 792.446 kb on - strandat 792.512 kb on - strandat 792.577 kb on - strandat 792.577 kb on - strandat 792.595 kb on - strandat 792.600 kb on - strandat 792.641 kb on - strand, within Dsui_0785at 792.643 kb on + strand, within Dsui_0785at 792.663 kb on + strand, within Dsui_0785at 792.714 kb on + strand, within Dsui_0785at 792.727 kb on - strand, within Dsui_0785at 792.746 kb on + strand, within Dsui_0785at 792.746 kb on + strand, within Dsui_0785at 792.754 kb on - strand, within Dsui_0785at 792.754 kb on - strand, within Dsui_0785at 792.754 kb on - strand, within Dsui_0785at 792.774 kb on + strandat 792.774 kb on + strand, within Dsui_0785at 792.856 kb on - strand, within Dsui_0785at 792.923 kb on - strand, within Dsui_0785at 792.960 kb on + strand, within Dsui_0785at 793.015 kb on + strand, within Dsui_0785at 793.124 kb on - strandat 793.154 kb on - strandat 793.169 kb on + strandat 793.287 kb on + strandat 793.326 kb on - strand, within Dsui_0786at 793.351 kb on - strand, within Dsui_0786at 793.354 kb on - strandat 793.356 kb on - strand, within Dsui_0786at 793.427 kb on - strand, within Dsui_0786at 793.462 kb on - strand, within Dsui_0786at 793.476 kb on - strand, within Dsui_0786at 793.476 kb on - strand, within Dsui_0786at 793.502 kb on + strand, within Dsui_0786at 793.502 kb on + strand, within Dsui_0786at 793.561 kb on + strand, within Dsui_0786at 793.600 kb on - strand, within Dsui_0786at 793.607 kb on - strandat 793.659 kb on + strand, within Dsui_0786at 793.662 kb on - strand, within Dsui_0786at 793.704 kb on - strand, within Dsui_0786at 793.770 kb on - strand, within Dsui_0786at 793.948 kb on + strand, within Dsui_0786at 794.034 kb on + strand, within Dsui_0786at 794.047 kb on - strandat 794.086 kb on + strandat 794.108 kb on + strandat 794.118 kb on + strandat 794.167 kb on - strandat 794.268 kb on - strand, within Dsui_0787at 794.294 kb on - strand, within Dsui_0787at 794.411 kb on + strand, within Dsui_0787at 794.494 kb on + strand, within Dsui_0787at 794.505 kb on + strand, within Dsui_0787at 794.505 kb on + strand, within Dsui_0787at 794.505 kb on + strand, within Dsui_0787at 794.513 kb on - strand, within Dsui_0787at 794.513 kb on - strand, within Dsui_0787at 794.513 kb on - strand, within Dsui_0787at 794.575 kb on + strandat 794.657 kb on + strand, within Dsui_0788at 794.791 kb on + strandat 794.846 kb on + strand, within Dsui_0788at 794.864 kb on - strand, within Dsui_0788at 794.864 kb on - strand, within Dsui_0788at 794.909 kb on - strand, within Dsui_0788at 794.919 kb on + strand, within Dsui_0788at 795.040 kb on - strand, within Dsui_0788at 795.112 kb on - strand, within Dsui_0788

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM
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792,242 - Dsui_0784 0.75 -0.2
792,242 - Dsui_0784 0.75 -1.6
792,246 + Dsui_0784 0.75 +0.7
792,254 - Dsui_0784 0.76 +0.4
792,312 + Dsui_0784 0.81 +0.7
792,320 - Dsui_0784 0.81 -1.6
792,320 - Dsui_0784 0.81 -0.6
792,346 - Dsui_0784 0.83 -0.8
792,438 + +0.7
792,446 - -2.3
792,512 - +0.1
792,577 - +0.4
792,577 - -0.1
792,595 - +0.4
792,600 - -0.0
792,641 - Dsui_0785 0.15 -0.3
792,643 + Dsui_0785 0.16 -2.4
792,663 + Dsui_0785 0.19 -2.4
792,714 + Dsui_0785 0.28 -0.3
792,727 - Dsui_0785 0.31 -0.3
792,746 + Dsui_0785 0.34 -0.3
792,746 + Dsui_0785 0.34 -2.1
792,754 - Dsui_0785 0.35 -1.1
792,754 - Dsui_0785 0.35 -0.2
792,754 - Dsui_0785 0.35 +0.6
792,774 + +0.7
792,774 + Dsui_0785 0.39 -0.3
792,856 - Dsui_0785 0.54 -0.6
792,923 - Dsui_0785 0.66 -0.1
792,960 + Dsui_0785 0.72 +0.7
793,015 + Dsui_0785 0.82 -0.3
793,124 - +0.9
793,154 - -0.2
793,169 + +0.7
793,287 + -0.4
793,326 - Dsui_0786 0.10 -1.3
793,351 - Dsui_0786 0.13 +0.7
793,354 - -0.3
793,356 - Dsui_0786 0.14 +0.7
793,427 - Dsui_0786 0.22 +0.5
793,462 - Dsui_0786 0.26 -0.9
793,476 - Dsui_0786 0.27 -2.3
793,476 - Dsui_0786 0.27 -2.6
793,502 + Dsui_0786 0.30 +0.1
793,502 + Dsui_0786 0.30 -0.3
793,561 + Dsui_0786 0.37 -0.2
793,600 - Dsui_0786 0.41 -0.9
793,607 - +0.7
793,659 + Dsui_0786 0.48 +0.2
793,662 - Dsui_0786 0.48 -0.3
793,704 - Dsui_0786 0.53 -1.9
793,770 - Dsui_0786 0.60 +0.3
793,948 + Dsui_0786 0.80 -0.1
794,034 + Dsui_0786 0.90 +0.4
794,047 - -0.0
794,086 + -0.3
794,108 + -0.8
794,118 + +0.6
794,167 - -2.7
794,268 - Dsui_0787 0.30 -2.7
794,294 - Dsui_0787 0.36 -2.6
794,411 + Dsui_0787 0.62 -1.2
794,494 + Dsui_0787 0.81 -2.0
794,505 + Dsui_0787 0.83 -1.4
794,505 + Dsui_0787 0.83 -1.8
794,505 + Dsui_0787 0.83 -1.8
794,513 - Dsui_0787 0.85 -1.7
794,513 - Dsui_0787 0.85 -1.9
794,513 - Dsui_0787 0.85 -1.9
794,575 + -1.1
794,657 + Dsui_0788 0.16 +0.8
794,791 + +0.7
794,846 + Dsui_0788 0.41 -1.0
794,864 - Dsui_0788 0.44 -0.9
794,864 - Dsui_0788 0.44 +0.2
794,909 - Dsui_0788 0.50 -0.7
794,919 + Dsui_0788 0.51 +1.7
795,040 - Dsui_0788 0.68 +0.3
795,112 - Dsui_0788 0.77 +0.1

Or see this region's nucleotide sequence