Strain Fitness in Dechlorosoma suillum PS around Dsui_0755

Experiment: ALP with Nickel (II) chloride 3.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0753 and Dsui_0754 are separated by 130 nucleotidesDsui_0754 and Dsui_0755 are separated by 133 nucleotidesDsui_0755 and Dsui_0756 are separated by 142 nucleotidesDsui_0756 and Dsui_0757 are separated by 43 nucleotides Dsui_0753: Dsui_0753 - ATPase component of ABC transporters with duplicated ATPase domain, at 752,234 to 753,850 _0753 Dsui_0754: Dsui_0754 - hypothetical protein, at 753,981 to 754,355 _0754 Dsui_0755: Dsui_0755 - hypothetical protein, at 754,489 to 755,103 _0755 Dsui_0756: Dsui_0756 - hypothetical protein, at 755,246 to 755,941 _0756 Dsui_0757: Dsui_0757 - HD-GYP domain-containing protein, at 755,985 to 757,190 _0757 Position (kb) 754 755 756Strain fitness (log2 ratio) -3 -2 -1 0 1at 753.559 kb on - strand, within Dsui_0753at 753.559 kb on - strand, within Dsui_0753at 753.693 kb on - strandat 753.703 kb on - strandat 753.704 kb on - strandat 753.714 kb on - strandat 753.727 kb on - strandat 754.005 kb on - strandat 754.016 kb on + strandat 754.030 kb on + strand, within Dsui_0754at 754.030 kb on + strand, within Dsui_0754at 754.036 kb on + strand, within Dsui_0754at 754.084 kb on + strand, within Dsui_0754at 754.084 kb on + strand, within Dsui_0754at 754.085 kb on - strandat 754.100 kb on - strand, within Dsui_0754at 754.100 kb on - strand, within Dsui_0754at 754.122 kb on - strand, within Dsui_0754at 754.185 kb on - strand, within Dsui_0754at 754.226 kb on + strand, within Dsui_0754at 754.272 kb on + strand, within Dsui_0754at 754.346 kb on + strandat 754.365 kb on - strandat 754.421 kb on + strandat 754.438 kb on - strandat 754.458 kb on - strandat 754.492 kb on + strandat 754.493 kb on - strandat 754.500 kb on - strandat 754.500 kb on - strandat 754.549 kb on + strandat 754.549 kb on + strandat 754.583 kb on + strand, within Dsui_0755at 754.583 kb on + strand, within Dsui_0755at 754.589 kb on - strand, within Dsui_0755at 754.589 kb on - strand, within Dsui_0755at 754.591 kb on - strand, within Dsui_0755at 754.591 kb on - strand, within Dsui_0755at 754.602 kb on - strand, within Dsui_0755at 754.638 kb on + strand, within Dsui_0755at 754.648 kb on + strand, within Dsui_0755at 754.655 kb on + strand, within Dsui_0755at 754.655 kb on + strand, within Dsui_0755at 754.663 kb on - strand, within Dsui_0755at 754.781 kb on + strand, within Dsui_0755at 754.789 kb on - strand, within Dsui_0755at 754.832 kb on + strand, within Dsui_0755at 754.832 kb on + strand, within Dsui_0755at 754.840 kb on - strand, within Dsui_0755at 754.840 kb on - strand, within Dsui_0755at 754.857 kb on + strand, within Dsui_0755at 754.936 kb on - strand, within Dsui_0755at 754.938 kb on + strand, within Dsui_0755at 755.007 kb on - strand, within Dsui_0755at 755.080 kb on + strandat 755.098 kb on + strandat 755.098 kb on + strandat 755.103 kb on + strandat 755.103 kb on + strandat 755.103 kb on + strandat 755.103 kb on + strandat 755.188 kb on + strandat 755.204 kb on + strandat 755.261 kb on - strandat 755.276 kb on + strandat 755.328 kb on + strandat 755.435 kb on - strand, within Dsui_0756at 755.450 kb on - strand, within Dsui_0756at 755.532 kb on + strand, within Dsui_0756at 755.532 kb on + strand, within Dsui_0756at 755.540 kb on - strand, within Dsui_0756at 755.540 kb on - strand, within Dsui_0756at 755.672 kb on - strand, within Dsui_0756at 755.712 kb on + strand, within Dsui_0756at 755.769 kb on - strand, within Dsui_0756at 755.796 kb on + strand, within Dsui_0756at 755.817 kb on + strandat 755.826 kb on + strand, within Dsui_0756at 755.973 kb on + strandat 755.981 kb on - strandat 756.016 kb on + strandat 756.059 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ALP with Nickel (II) chloride 3.5 mM
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753,559 - Dsui_0753 0.82 -0.3
753,559 - Dsui_0753 0.82 -1.0
753,693 - +1.3
753,703 - -0.9
753,704 - +0.7
753,714 - -0.3
753,727 - -1.1
754,005 - -0.2
754,016 + -0.3
754,030 + Dsui_0754 0.13 -1.9
754,030 + Dsui_0754 0.13 -0.3
754,036 + Dsui_0754 0.15 -0.3
754,084 + Dsui_0754 0.27 -1.3
754,084 + Dsui_0754 0.27 +0.7
754,085 - -0.3
754,100 - Dsui_0754 0.32 +1.3
754,100 - Dsui_0754 0.32 +1.1
754,122 - Dsui_0754 0.38 -0.7
754,185 - Dsui_0754 0.54 -1.1
754,226 + Dsui_0754 0.65 -1.3
754,272 + Dsui_0754 0.78 -0.9
754,346 + -0.3
754,365 - -0.3
754,421 + -0.9
754,438 - +0.1
754,458 - -1.3
754,492 + -0.9
754,493 - -1.8
754,500 - -0.6
754,500 - -0.3
754,549 + +0.7
754,549 + +0.3
754,583 + Dsui_0755 0.15 +0.7
754,583 + Dsui_0755 0.15 -0.3
754,589 - Dsui_0755 0.16 -1.6
754,589 - Dsui_0755 0.16 -1.9
754,591 - Dsui_0755 0.17 -0.3
754,591 - Dsui_0755 0.17 -0.3
754,602 - Dsui_0755 0.18 -2.9
754,638 + Dsui_0755 0.24 -0.9
754,648 + Dsui_0755 0.26 +0.7
754,655 + Dsui_0755 0.27 -1.6
754,655 + Dsui_0755 0.27 -1.6
754,663 - Dsui_0755 0.28 -0.3
754,781 + Dsui_0755 0.47 -1.3
754,789 - Dsui_0755 0.49 -0.3
754,832 + Dsui_0755 0.56 +1.7
754,832 + Dsui_0755 0.56 -2.3
754,840 - Dsui_0755 0.57 +0.5
754,840 - Dsui_0755 0.57 +0.3
754,857 + Dsui_0755 0.60 -1.9
754,936 - Dsui_0755 0.73 -0.1
754,938 + Dsui_0755 0.73 -1.3
755,007 - Dsui_0755 0.84 +0.0
755,080 + -0.3
755,098 + +0.7
755,098 + +0.7
755,103 + -0.9
755,103 + -0.3
755,103 + -0.3
755,103 + -0.3
755,188 + -0.3
755,204 + +1.7
755,261 - -0.5
755,276 + -1.6
755,328 + -0.3
755,435 - Dsui_0756 0.27 -1.8
755,450 - Dsui_0756 0.29 -1.9
755,532 + Dsui_0756 0.41 -1.3
755,532 + Dsui_0756 0.41 -0.3
755,540 - Dsui_0756 0.42 -2.3
755,540 - Dsui_0756 0.42 -2.5
755,672 - Dsui_0756 0.61 -2.3
755,712 + Dsui_0756 0.67 -0.9
755,769 - Dsui_0756 0.75 -2.5
755,796 + Dsui_0756 0.79 +0.7
755,817 + +0.7
755,826 + Dsui_0756 0.83 +0.7
755,973 + +0.7
755,981 - -0.4
756,016 + -0.9
756,059 - -0.0

Or see this region's nucleotide sequence